Non-Coding RNA Search

rplun0105_i7.y1

Sequence:


               
               CATTCCGAAGCTTTTAAATCCCCTAATACGATTTCAGCTGATTGATTGGAATCCTCTTAA
GTTTGATTCCATAGGTTTAAAACAGATGCCGTGGTTCACATCCATCAAAGAATTTATAGA
TAGCAGTATGGAAGATTCAAAGAAGAAAAATAGTTCTGATAAGAAAATTTTGTCTGCTGT
TATCAACAAAGCAGTTATTCCTCGACTTTCAGACTTTGTAGAATTCGTTTGGGATCCCTT
GTCAACCTCACAGACAACAAGTTTAATAAGGCAGTGCAAAATGATTCTTGAAGAACATTC
CACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCCGAAGCTTTTAAATCCCCTAATACGATTTCAGCTGATTGATTGGAATCCTCTTAA
GTTTGATTCCATAGGTTTAAAACAGATGCCGTGGTTCACATCCATCAAAGAATTTATAGA
TAGCAGTATGGAAGATTCAAAGAAGAAAAATAGTTCTGATAAGAAAATTTTGTCTGCTGT
TATCAACAAAGCAGTTATTCCTCGACTTTCAGACTTTGTAGAATTCGTTTGGGATCCCTT
GTCAACCTCACAGACAACAAGTTTAATAAGGCAGTGCAAAATGATTCTTGAAGAACATTC
CACT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               58-208, gnl|bosTau2|chr11 (30166189-30166039)
               

               
               58-208, gnl|canFam2|chr17 (50726527-50726271)
               

               
               58-208, gnl|dasNov1|scaffold_43070 (6275-6518)
               

               
               58-208, gnl|echTel1|scaffold_280155 (107822-107547)
               

               
               58-208, gnl|galGal2|chr3 (108618526-108618750)
               

               
               58-208, gnl|hg17|chr2 (75826508-75826767)
               

               
               58-208, gnl|Hg17|chr2 (75826762-75826612)
               

               
               58-208, gnl|mm7|chr6 (81965064-81964868)
               

               
               58-208, gnl|Mm7|chr6 (81964871-81965021)
               

               
               58-208, gnl|oryCun1|scaffold_186548 (9802-10059)
               

               
               58-208, gnl|panTro1|chr12 (78276036-78276295)
               

               
               58-208, gnl|rheMac2|chr13 (75999091-75999348)
               

               
               58-208, gnl|rn3|chr4 (116436899-116436704)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-208, gnl|bosTau2|chr11 (30166189-30166039)
               

               
               58-208, gnl|canFam2|chr17 (50726527-50726271)
               

               
               58-208, gnl|dasNov1|scaffold_43070 (6275-6518)
               

               
               58-208, gnl|echTel1|scaffold_280155 (107822-107547)
               

               
               58-208, gnl|galGal2|chr3 (108618526-108618750)
               

               
               58-208, gnl|hg17|chr2 (75826508-75826767)
               

               
               58-208, gnl|Hg17|chr2 (75826762-75826612)
               

               
               58-208, gnl|mm7|chr6 (81965064-81964868)
               

               
               58-208, gnl|Mm7|chr6 (81964871-81965021)
               

               
               58-208, gnl|oryCun1|scaffold_186548 (9802-10059)
               

               
               58-208, gnl|panTro1|chr12 (78276036-78276295)
               

               
               58-208, gnl|rheMac2|chr13 (75999091-75999348)
               

               
               58-208, gnl|rn3|chr4 (116436899-116436704)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	58-208, gnl\|bosTau2\|chr11 (30166189-30166039)
	58-208, gnl\|canFam2\|chr17 (50726527-50726271)
	58-208, gnl\|dasNov1\|scaffold_43070 (6275-6518)
	58-208, gnl\|echTel1\|scaffold_280155 (107822-107547)
	58-208, gnl\|galGal2\|chr3 (108618526-108618750)
	58-208, gnl\|hg17\|chr2 (75826508-75826767)
	58-208, gnl\|Hg17\|chr2 (75826762-75826612)
	58-208, gnl\|mm7\|chr6 (81965064-81964868)
	58-208, gnl\|Mm7\|chr6 (81964871-81965021)
	58-208, gnl\|oryCun1\|scaffold_186548 (9802-10059)
	58-208, gnl\|panTro1\|chr12 (78276036-78276295)
	58-208, gnl\|rheMac2\|chr13 (75999091-75999348)
	58-208, gnl\|rn3\|chr4 (116436899-116436704)