Non-Coding RNA Search

rplun0105_m22.y1

Sequence:


               
               GATTTATTAAATCATTTATATAAGGAGGGCCTGCTTTCTGCTTTATAACCTGACAATCAG
GGTGTTTATTTATCTTCCTTTTTAAGCCTATGACTAAGCACAACTCATCTTCACAAATGC
ATGTAGTGAGTTTGATTTCTAGAAATGTCCAAATAATGGTAATAATGCTGCAGAGGCCAA
GTCATTGGTGATAACTTCAGAAAGGAGCATATTAGTGAGGTGTTTGTCCATATAGCATTG
GTACTTGGAATAAGGACAAGCTTTCAGTTTTCATTTTTTCTTTAACCAAGACCAATTACA
TTTTAAAATATGAAGAGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTATTAAATCATTTATATAAGGAGGGCCTGCTTTCTGCTTTATAACCTGACAATCAG
GGTGTTTATTTATCTTCCTTTTTAAGCCTATGACTAAGCACAACTCATCTTCACAAATGC
ATGTAGTGAGTTTGATTTCTAGAAATGTCCAAATAATGGTAATAATGCTGCAGAGGCCAA
GTCATTGGTGATAACTTCAGAAAGGAGCATATTAGTGAGGTGTTTGTCCATATAGCATTG
GTACTTGGAATAAGGACAAGCTTTCAGTTTTCATTTTTTCTTTAACCAAGACCAATTACA
TTTTAAAATATGAAGAGAATG

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               4-175, gnl|bosTau2|chr1 (34435686-34435857)
               

               
               4-175, gnl|Hg17|chr3 (116075726-116075553)
               

               
               4-175, gnl|Mm7|chr16 (42862409-42862565)
               


               
               204-321, gnl|bosTau2|chr1 (34435863-34435975)
               

               
               204-321, gnl|canFam2|chr33 (22091062-22091470)
               

               
               204-321, gnl|dasNov1|scaffold_1880 (85124-85520)
               

               
               204-321, gnl|echTel1|scaffold_320442 (117542-117133)
               

               
               204-321, gnl|hg17|chr3 (116075093-116075510)
               

               
               204-321, gnl|Hg17|chr3 (116075547-116075414)
               

               
               204-321, gnl|loxAfr1|scaffold_16768 (33015-32581)
               

               
               204-321, gnl|mm7|chr16 (42863026-42862619)
               

               
               204-321, gnl|Mm7|chr16 (42862597-42862713)
               

               
               204-321, gnl|monDom2|scaffold_24 (9807079-9807478)
               

               
               204-321, gnl|panTro1|chr2 (117784010-117784427)
               

               
               204-321, gnl|rheMac2|chr2 (34885487-34885906)
               

               
               204-321, gnl|rn3|chr11 (59260415-59260818)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-175, gnl|bosTau2|chr1 (34435686-34435857)
               

               
               4-175, gnl|Hg17|chr3 (116075726-116075553)
               

               
               4-175, gnl|Mm7|chr16 (42862409-42862565)
               


               
               204-321, gnl|bosTau2|chr1 (34435863-34435975)
               

               
               204-321, gnl|canFam2|chr33 (22091062-22091470)
               

               
               204-321, gnl|dasNov1|scaffold_1880 (85124-85520)
               

               
               204-321, gnl|echTel1|scaffold_320442 (117542-117133)
               

               
               204-321, gnl|hg17|chr3 (116075093-116075510)
               

               
               204-321, gnl|Hg17|chr3 (116075547-116075414)
               

               
               204-321, gnl|loxAfr1|scaffold_16768 (33015-32581)
               

               
               204-321, gnl|mm7|chr16 (42863026-42862619)
               

               
               204-321, gnl|Mm7|chr16 (42862597-42862713)
               

               
               204-321, gnl|monDom2|scaffold_24 (9807079-9807478)
               

               
               204-321, gnl|panTro1|chr2 (117784010-117784427)
               

               
               204-321, gnl|rheMac2|chr2 (34885487-34885906)
               

               
               204-321, gnl|rn3|chr11 (59260415-59260818)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	4-175, gnl\|bosTau2\|chr1 (34435686-34435857)
	4-175, gnl\|Hg17\|chr3 (116075726-116075553)
	4-175, gnl\|Mm7\|chr16 (42862409-42862565)

	204-321, gnl\|bosTau2\|chr1 (34435863-34435975)
	204-321, gnl\|canFam2\|chr33 (22091062-22091470)
	204-321, gnl\|dasNov1\|scaffold_1880 (85124-85520)
	204-321, gnl\|echTel1\|scaffold_320442 (117542-117133)
	204-321, gnl\|hg17\|chr3 (116075093-116075510)
	204-321, gnl\|Hg17\|chr3 (116075547-116075414)
	204-321, gnl\|loxAfr1\|scaffold_16768 (33015-32581)
	204-321, gnl\|mm7\|chr16 (42863026-42862619)
	204-321, gnl\|Mm7\|chr16 (42862597-42862713)
	204-321, gnl\|monDom2\|scaffold_24 (9807079-9807478)
	204-321, gnl\|panTro1\|chr2 (117784010-117784427)
	204-321, gnl\|rheMac2\|chr2 (34885487-34885906)
	204-321, gnl\|rn3\|chr11 (59260415-59260818)