Non-Coding RNA Search

rplun0106_c15.y1

Sequence:


               
               CCAGAACTGAATTAGCCCTGGTAATAAAAGCACTGCCAAAACATCTCAGAGATTTTAAAT
TATATGCGTACTGGAGTTCAAAGATCTTGAACTTTCTTGGTAATTTCACAATGACCTGCC
AAAACTGCTAGTCACTTTACATCCTCAGGTATTGTAACCACTGGGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAACTGAATTAGCCCTGGTAATAAAAGCACTGCCAAAACATCTCAGAGATTTTAAAT
TATATGCGTACTGGAGTTCAAAGATCTTGAACTTTCTTGGTAATTTCACAATGACCTGCC
AAAACTGCTAGTCACTTTACATCCTCAGGTATTGTAACCACTGGGCTTTC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-170, gnl|bosTau2|chr1 (85989144-85988975)
               

               
               1-170, gnl|canFam2|chr23 (35679995-35680252)
               

               
               1-170, gnl|dasNov1|scaffold_73911 (1968-1700)
               

               
               1-170, gnl|echTel1|scaffold_222617 (5402-5662)
               

               
               1-170, gnl|hg17|chr3 (137347133-137347394)
               

               
               1-170, gnl|Hg17|chr3 (137347152-137347324)
               

               
               1-170, gnl|loxAfr1|scaffold_7357 (50997-51262)
               

               
               1-170, gnl|mm7|chr9 (100797361-100797107)
               

               
               1-170, gnl|Mm7|chr9 (100797347-100797175)
               

               
               1-170, gnl|monDom2|scaffold_24 (30885347-30885635)
               

               
               1-170, gnl|oryCun1|scaffold_165781 (576-318)
               

               
               1-170, gnl|panTro1|chr2 (139613967-139614234)
               

               
               1-170, gnl|rheMac2|chr2 (151659328-151659060)
               

               
               1-170, gnl|rn3|chr8 (106081861-106081611)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr1 (85989144-85988975)
               

               
               1-170, gnl|canFam2|chr23 (35679995-35680252)
               

               
               1-170, gnl|dasNov1|scaffold_73911 (1968-1700)
               

               
               1-170, gnl|echTel1|scaffold_222617 (5402-5662)
               

               
               1-170, gnl|hg17|chr3 (137347133-137347394)
               

               
               1-170, gnl|Hg17|chr3 (137347152-137347324)
               

               
               1-170, gnl|loxAfr1|scaffold_7357 (50997-51262)
               

               
               1-170, gnl|mm7|chr9 (100797361-100797107)
               

               
               1-170, gnl|Mm7|chr9 (100797347-100797175)
               

               
               1-170, gnl|monDom2|scaffold_24 (30885347-30885635)
               

               
               1-170, gnl|oryCun1|scaffold_165781 (576-318)
               

               
               1-170, gnl|panTro1|chr2 (139613967-139614234)
               

               
               1-170, gnl|rheMac2|chr2 (151659328-151659060)
               

               
               1-170, gnl|rn3|chr8 (106081861-106081611)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-170, gnl\|bosTau2\|chr1 (85989144-85988975)
	1-170, gnl\|canFam2\|chr23 (35679995-35680252)
	1-170, gnl\|dasNov1\|scaffold_73911 (1968-1700)
	1-170, gnl\|echTel1\|scaffold_222617 (5402-5662)
	1-170, gnl\|hg17\|chr3 (137347133-137347394)
	1-170, gnl\|Hg17\|chr3 (137347152-137347324)
	1-170, gnl\|loxAfr1\|scaffold_7357 (50997-51262)
	1-170, gnl\|mm7\|chr9 (100797361-100797107)
	1-170, gnl\|Mm7\|chr9 (100797347-100797175)
	1-170, gnl\|monDom2\|scaffold_24 (30885347-30885635)
	1-170, gnl\|oryCun1\|scaffold_165781 (576-318)
	1-170, gnl\|panTro1\|chr2 (139613967-139614234)
	1-170, gnl\|rheMac2\|chr2 (151659328-151659060)
	1-170, gnl\|rn3\|chr8 (106081861-106081611)