Non-Coding RNA Search

rplun0107_l3.y1

Sequence:


               
               GTTGCAGTGAAGCACACAAATGTAAGAGTTGAAATCTCTTAAAACTTGAAATTATAGTAG
CAATAAATTACTATTCCCTTAATATCTTCACATGCTAGAGGACAGCATTTTATCTTTTTT
TTAAATTTTTTggccacacctgtggcatgtggaaattcccaggtcagggatcagacccgc
accacagcattgacAACACTGGGTCCTTCACTGCTATGCCCCCAGGAAGCTCCTAGAGGA
CAGTGTTTTGAAAGTTGGATTGTCAGGTTCTTCTGGAGACTAAGAAAACAGAGTCCTTGA
AGTCAAGCCGATTCTGCTTTTAGCCTCCTAAATGAAAAGGTAGATAGAACAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCAGTGAAGCACACAAATGTAAGAGTTGAAATCTCTTAAAACTTGAAATTATAGTAG
CAATAAATTACTATTCCCTTAATATCTTCACATGCTAGAGGACAGCATTTTATCTTTTTT
TTAAATTTTTTggccacacctgtggcatgtggaaattcccaggtcagggatcagacccgc
accacagcattgacAACACTGGGTCCTTCACTGCTATGCCCCCAGGAAGCTCCTAGAGGA
CAGTGTTTTGAAAGTTGGATTGTCAGGTTCTTCTGGAGACTAAGAAAACAGAGTCCTTGA
AGTCAAGCCGATTCTGCTTTTAGCCTCCTAAATGAAAAGGTAGATAGAACAGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               233-354, - strand, RNAz p=0.998494

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-354, - strand, RNAz p=0.998494

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               245-344, - strand, RNAmicro p=0.995287

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               245-344, - strand, RNAmicro p=0.995287

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-112, gnl|bosTau2|chr21 (13402860-13402971)
               

               
               1-112, gnl|Hg17|chr15 (81221625-81221726)
               


               
               233-354, gnl|bosTau2|chr21 (13402954-13403076)
               

               
               233-354, gnl|canFam2|chr3 (57442422-57442500)
               

               
               233-354, gnl|dasNov1|scaffold_67086 (5195-5258)
               

               
               233-354, gnl|echTel1|scaffold_319280 (37792-37714)
               

               
               233-354, gnl|Hg17|chr15 (81221709-81221832)
               

               
               233-354, gnl|hg17|chr6 (43619858-43619937)
               

               
               233-354, gnl|loxAfr1|scaffold_3697 (75273-75215)
               

               
               233-354, gnl|mm7|chr7 (77403137-77403216)
               

               
               233-354, gnl|Mm7|chr7 (77403116-77403219)
               

               
               233-354, gnl|oryCun1|scaffold_208785 (35653-35577)
               

               
               233-354, gnl|panTro1|chr5 (44219906-44219985)
               

               
               233-354, gnl|rheMac2|chr4 (43445307-43445386)
               

               
               233-354, gnl|rn3|chr1 (137822391-137822470)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr21 (13402860-13402971)
               

               
               1-112, gnl|Hg17|chr15 (81221625-81221726)
               


               
               233-354, gnl|bosTau2|chr21 (13402954-13403076)
               

               
               233-354, gnl|canFam2|chr3 (57442422-57442500)
               

               
               233-354, gnl|dasNov1|scaffold_67086 (5195-5258)
               

               
               233-354, gnl|echTel1|scaffold_319280 (37792-37714)
               

               
               233-354, gnl|Hg17|chr15 (81221709-81221832)
               

               
               233-354, gnl|hg17|chr6 (43619858-43619937)
               

               
               233-354, gnl|loxAfr1|scaffold_3697 (75273-75215)
               

               
               233-354, gnl|mm7|chr7 (77403137-77403216)
               

               
               233-354, gnl|Mm7|chr7 (77403116-77403219)
               

               
               233-354, gnl|oryCun1|scaffold_208785 (35653-35577)
               

               
               233-354, gnl|panTro1|chr5 (44219906-44219985)
               

               
               233-354, gnl|rheMac2|chr4 (43445307-43445386)
               

               
               233-354, gnl|rn3|chr1 (137822391-137822470)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-112, gnl\|bosTau2\|chr21 (13402860-13402971)
	1-112, gnl\|Hg17\|chr15 (81221625-81221726)

	233-354, gnl\|bosTau2\|chr21 (13402954-13403076)
	233-354, gnl\|canFam2\|chr3 (57442422-57442500)
	233-354, gnl\|dasNov1\|scaffold_67086 (5195-5258)
	233-354, gnl\|echTel1\|scaffold_319280 (37792-37714)
	233-354, gnl\|Hg17\|chr15 (81221709-81221832)
	233-354, gnl\|hg17\|chr6 (43619858-43619937)
	233-354, gnl\|loxAfr1\|scaffold_3697 (75273-75215)
	233-354, gnl\|mm7\|chr7 (77403137-77403216)
	233-354, gnl\|Mm7\|chr7 (77403116-77403219)
	233-354, gnl\|oryCun1\|scaffold_208785 (35653-35577)
	233-354, gnl\|panTro1\|chr5 (44219906-44219985)
	233-354, gnl\|rheMac2\|chr4 (43445307-43445386)
	233-354, gnl\|rn3\|chr1 (137822391-137822470)