Non-Coding RNA Search

rplun0109_g22.y1

Sequence:


               
               CCCCCCAGACATTCTGGACAAGACACTCCAGGTTTACTCAAAACTGCAAAATGATATCAA
GTTGCATGGAACAAAGAAACCCACGAAGCCTTACCAGGACTGCTGCATAACATCATTCGG
CAGGAGGAAGCGGCACATGTTCGCAGTCTGGTTGTTACTTTTGGTGAAAGGCACCAGGCT
GCTGTAGATTGGGTACGGAGTCATGATGGTAAAGGAGAGGCACCAGGTAGCGGCGATCAC
CTTCAAAGCTTGGGATTTCGTCTGCCAGACTCGGGACTGTAAGGGTTTGCAAATGGCACC
GTATCTCTCCAGCGATATGGCTACCAGATTGAAAGTGGATACGCTCACAGAGGTGCCTGG
AAAAGAAACAAAGAAGCGCGTTATGCAGGCTCCGAAATCCAAAGTTTGTTTGCACAGCAG
CTTAAGCACACCTGATCTGCACAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCAGACATTCTGGACAAGACACTCCAGGTTTACTCAAAACTGCAAAATGATATCAA
GTTGCATGGAACAAAGAAACCCACGAAGCCTTACCAGGACTGCTGCATAACATCATTCGG
CAGGAGGAAGCGGCACATGTTCGCAGTCTGGTTGTTACTTTTGGTGAAAGGCACCAGGCT
GCTGTAGATTGGGTACGGAGTCATGATGGTAAAGGAGAGGCACCAGGTAGCGGCGATCAC
CTTCAAAGCTTGGGATTTCGTCTGCCAGACTCGGGACTGTAAGGGTTTGCAAATGGCACC
GTATCTCTCCAGCGATATGGCTACCAGATTGAAAGTGGATACGCTCACAGAGGTGCCTGG
AAAAGAAACAAAGAAGCGCGTTATGCAGGCTCCGAAATCCAAAGTTTGTTTGCACAGCAG
CTTAAGCACACCTGATCTGCACAGGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-398, + strand, RNAz p=0.635222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, + strand, RNAz p=0.635222

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-448, gnl|bosTau2|chr6 (24210726-24211170)
               

               
               2-448, gnl|Hg17|chr4 (26163435-26163881)
               

               
               2-448, gnl|Mm7|chr5 (53076075-53076507)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-448, gnl|bosTau2|chr6 (24210726-24211170)
               

               
               2-448, gnl|Hg17|chr4 (26163435-26163881)
               

               
               2-448, gnl|Mm7|chr5 (53076075-53076507)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	2-448, gnl\|bosTau2\|chr6 (24210726-24211170)
	2-448, gnl\|Hg17\|chr4 (26163435-26163881)
	2-448, gnl\|Mm7\|chr5 (53076075-53076507)