Non-Coding RNA Search

rplun0113_m10.y1

Sequence:


               
               CAGAATCATGTCTAGATGCAGCTCAAGGAAACAGAAATGGTACAGGACTGAGACTGTGAA
TCGAATTATAAGAAGGTATCAGAGACCTGTGTCACTGCTCGACTCAGGGATGGGAAGAGA
GGAGCAGCCTTGAACTCTGCCTTCCCTCTGGCTTGGCTCTTTGGTTTTTCCCGTGGGTTT
CATGCCCAGTCTTCCCTGCTGCCCAGTTTCACACCCTTCACACGCCCCCAGCCGGGCTGA
TTGACTTGTCTAAGGTTGCAAGGTGGGGATGTGGAAACTGAGCCGTGTCTCCTGCCAAAA
AGGGGATGTGCCGCAGAGGCAAGCTTAAATTCACGTCCATAGGTTAGCAGATTGCTTCAC
ACCTCCGTGTCTCAGATTCCTCATCTGTAAAGTAAGGATAATAATAACACTACTTCATAA
TAGGGTTATATACGACTACTACTCCTCTGAGGATTAGCCGAGCAAATATTTGCAAAATGC
TTACAACAGTGCTTGGCACATAGCAAAGTCTGTATAAGTGTTAGTTAAATAAAAATAAGA
TGCCCAGATGGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATCATGTCTAGATGCAGCTCAAGGAAACAGAAATGGTACAGGACTGAGACTGTGAA
TCGAATTATAAGAAGGTATCAGAGACCTGTGTCACTGCTCGACTCAGGGATGGGAAGAGA
GGAGCAGCCTTGAACTCTGCCTTCCCTCTGGCTTGGCTCTTTGGTTTTTCCCGTGGGTTT
CATGCCCAGTCTTCCCTGCTGCCCAGTTTCACACCCTTCACACGCCCCCAGCCGGGCTGA
TTGACTTGTCTAAGGTTGCAAGGTGGGGATGTGGAAACTGAGCCGTGTCTCCTGCCAAAA
AGGGGATGTGCCGCAGAGGCAAGCTTAAATTCACGTCCATAGGTTAGCAGATTGCTTCAC
ACCTCCGTGTCTCAGATTCCTCATCTGTAAAGTAAGGATAATAATAACACTACTTCATAA
TAGGGTTATATACGACTACTACTCCTCTGAGGATTAGCCGAGCAAATATTTGCAAAATGC
TTACAACAGTGCTTGGCACATAGCAAAGTCTGTATAAGTGTTAGTTAAATAAAAATAAGA
TGCCCAGATGGTAAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               174-288, - strand, RNAz p=0.951351
               

               
               368-556, + strand, RNAz p=0.994233

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-288, - strand, RNAz p=0.951351
               

               
               368-556, + strand, RNAz p=0.994233

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-556, gnl|bosTau2|chr23 (8723446-8722900)
               

               
               1-556, gnl|Hg17|chr6 (37210573-37211146)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-556, gnl|bosTau2|chr23 (8723446-8722900)
               

               
               1-556, gnl|Hg17|chr6 (37210573-37211146)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	174-288, - strand, RNAz p=0.951351
	368-556, + strand, RNAz p=0.994233

	1-556, gnl\|bosTau2\|chr23 (8723446-8722900)
	1-556, gnl\|Hg17\|chr6 (37210573-37211146)