Non-Coding RNA Search

rplun0128_m13.y1

Sequence:


               
               GAGTGCTTTGCCCATCATTGAATGGAGTGGACCAATGAGGTGGTATTGATGAATTCAGTT
CTCCCGGACATTTTCCAGAAGCTCTCCTCCTGTTGTAGAAAGCAGTACAGTATCGTAAAT
GTCAACCAGTTCTATATGCAACCTGGTTTTTTTATAACTTCTATAGGAACATAATCAAAC
AGGAATTCTCTCCCCAGTGGATAATGCAACAGGCAAAACAGAGCTGCCCAAATATGTAAA
AGAAGTAATCCTTTGACGAAGTTCATGATCTGTGTGACATCTGCATTGATCTCACTGTTA
CTGATGGTACTGCTGTTCATGAGTCGTGTTAACATTCTCTCTGTGAAATCATGGTACAGT
CGCTGCCCAGAGGTACTGAGGAGAAAGCTGTATGGTTTGGCAGATGGTAGTGATAAAATG
AATCACAAGTAGTGTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGCTTTGCCCATCATTGAATGGAGTGGACCAATGAGGTGGTATTGATGAATTCAGTT
CTCCCGGACATTTTCCAGAAGCTCTCCTCCTGTTGTAGAAAGCAGTACAGTATCGTAAAT
GTCAACCAGTTCTATATGCAACCTGGTTTTTTTATAACTTCTATAGGAACATAATCAAAC
AGGAATTCTCTCCCCAGTGGATAATGCAACAGGCAAAACAGAGCTGCCCAAATATGTAAA
AGAAGTAATCCTTTGACGAAGTTCATGATCTGTGTGACATCTGCATTGATCTCACTGTTA
CTGATGGTACTGCTGTTCATGAGTCGTGTTAACATTCTCTCTGTGAAATCATGGTACAGT
CGCTGCCCAGAGGTACTGAGGAGAAAGCTGTATGGTTTGGCAGATGGTAGTGATAAAATG
AATCACAAGTAGTGTGGTAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-438, gnl|bosTau2|chrX (6074100-6074542)
               

               
               1-438, gnl|canFam2|chr11 (16467675-16468125)
               

               
               1-438, gnl|dasNov1|scaffold_35322 (4018-4461)
               

               
               1-438, gnl|hg17|chr5 (122978103-122978555)
               

               
               1-438, gnl|Hg17|chr5 (122978212-122978645)
               

               
               1-438, gnl|loxAfr1|scaffold_12586 (7752-7323)
               

               
               1-438, gnl|mm7|chr18 (54335032-54335467)
               

               
               1-438, gnl|Mm7|chr18 (54335132-54335553)
               

               
               1-438, gnl|monDom2|scaffold_60 (1780300-1779850)
               

               
               1-438, gnl|oryCun1|scaffold_202922 (13029-12684)
               

               
               1-438, gnl|panTro1|chr4 (129264177-129264627)
               

               
               1-438, gnl|rheMac2|chr6 (120006190-120006632)
               

               
               1-438, gnl|rn3|chr18 (49487408-49487813)
               

               
               1-438, gnl|xenTro1|scaffold_2 (4264567-4264224)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-438, gnl|bosTau2|chrX (6074100-6074542)
               

               
               1-438, gnl|canFam2|chr11 (16467675-16468125)
               

               
               1-438, gnl|dasNov1|scaffold_35322 (4018-4461)
               

               
               1-438, gnl|hg17|chr5 (122978103-122978555)
               

               
               1-438, gnl|Hg17|chr5 (122978212-122978645)
               

               
               1-438, gnl|loxAfr1|scaffold_12586 (7752-7323)
               

               
               1-438, gnl|mm7|chr18 (54335032-54335467)
               

               
               1-438, gnl|Mm7|chr18 (54335132-54335553)
               

               
               1-438, gnl|monDom2|scaffold_60 (1780300-1779850)
               

               
               1-438, gnl|oryCun1|scaffold_202922 (13029-12684)
               

               
               1-438, gnl|panTro1|chr4 (129264177-129264627)
               

               
               1-438, gnl|rheMac2|chr6 (120006190-120006632)
               

               
               1-438, gnl|rn3|chr18 (49487408-49487813)
               

               
               1-438, gnl|xenTro1|scaffold_2 (4264567-4264224)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-438, gnl\|bosTau2\|chrX (6074100-6074542)
	1-438, gnl\|canFam2\|chr11 (16467675-16468125)
	1-438, gnl\|dasNov1\|scaffold_35322 (4018-4461)
	1-438, gnl\|hg17\|chr5 (122978103-122978555)
	1-438, gnl\|Hg17\|chr5 (122978212-122978645)
	1-438, gnl\|loxAfr1\|scaffold_12586 (7752-7323)
	1-438, gnl\|mm7\|chr18 (54335032-54335467)
	1-438, gnl\|Mm7\|chr18 (54335132-54335553)
	1-438, gnl\|monDom2\|scaffold_60 (1780300-1779850)
	1-438, gnl\|oryCun1\|scaffold_202922 (13029-12684)
	1-438, gnl\|panTro1\|chr4 (129264177-129264627)
	1-438, gnl\|rheMac2\|chr6 (120006190-120006632)
	1-438, gnl\|rn3\|chr18 (49487408-49487813)
	1-438, gnl\|xenTro1\|scaffold_2 (4264567-4264224)