Non-Coding RNA Search

rplun0129_b5.y1

Sequence:


               
               TATTCCTTCTCAGACACAAGTAGGCAGTGAAAAGCGAAGGATGACATTGAGTATCTGAAA
TCTTAAATAGCTGACATTGTGTCAAGCTAGTAATCACTGAAGTTCTTTTTTAGACCTGAG
TGAAAATTTGGAAAACAGTATATGACAGAAGTTAAAGGAAAATggagttcccatcatggc
tcagtggttaacgaatctgactaggaaccatgaggtttcgggtttgattcctgg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCCTTCTCAGACACAAGTAGGCAGTGAAAAGCGAAGGATGACATTGAGTATCTGAAA
TCTTAAATAGCTGACATTGTGTCAAGCTAGTAATCACTGAAGTTCTTTTTTAGACCTGAG
TGAAAATTTGGAAAACAGTATATGACAGAAGTTAAAGGAAAATggagttcccatcatggc
tcagtggttaacgaatctgactaggaaccatgaggtttcgggtttgattcctgg

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               1-163, gnl|bosTau2|chr11 (40441550-40441713)
               

               
               1-163, gnl|canFam2|chr10 (65213698-65213852)
               

               
               1-163, gnl|dasNov1|scaffold_185408 (612-769)
               

               
               1-163, gnl|echTel1|scaffold_314380 (571-417)
               

               
               1-163, gnl|hg17|chr2 (62278180-62278325)
               

               
               1-163, gnl|Hg17|chr2 (62278179-62278326)
               

               
               1-163, gnl|monDom2|scaffold_1 (27240105-27240245)
               

               
               1-163, gnl|panTro1|chr12 (64495263-64495408)
               

               
               1-163, gnl|rheMac2|chr13 (62343617-62343760)
               

               
               1-163, gnl|rn3|chr14 (103581321-103581193)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr11 (40441550-40441713)
               

               
               1-163, gnl|canFam2|chr10 (65213698-65213852)
               

               
               1-163, gnl|dasNov1|scaffold_185408 (612-769)
               

               
               1-163, gnl|echTel1|scaffold_314380 (571-417)
               

               
               1-163, gnl|hg17|chr2 (62278180-62278325)
               

               
               1-163, gnl|Hg17|chr2 (62278179-62278326)
               

               
               1-163, gnl|monDom2|scaffold_1 (27240105-27240245)
               

               
               1-163, gnl|panTro1|chr12 (64495263-64495408)
               

               
               1-163, gnl|rheMac2|chr13 (62343617-62343760)
               

               
               1-163, gnl|rn3|chr14 (103581321-103581193)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-163, gnl\|bosTau2\|chr11 (40441550-40441713)
	1-163, gnl\|canFam2\|chr10 (65213698-65213852)
	1-163, gnl\|dasNov1\|scaffold_185408 (612-769)
	1-163, gnl\|echTel1\|scaffold_314380 (571-417)
	1-163, gnl\|hg17\|chr2 (62278180-62278325)
	1-163, gnl\|Hg17\|chr2 (62278179-62278326)
	1-163, gnl\|monDom2\|scaffold_1 (27240105-27240245)
	1-163, gnl\|panTro1\|chr12 (64495263-64495408)
	1-163, gnl\|rheMac2\|chr13 (62343617-62343760)
	1-163, gnl\|rn3\|chr14 (103581321-103581193)