Non-Coding RNA Search

rplun0130_l10.y1

Sequence:


               
               cagacacagcgacgccaggtggcagccacgtctgtcaacctacaccacagctcacggccg
tatccttaacccactaatcgaggccaggggttgaacctgagtcctcatggttgctagtca
gatttgtttccgctgagccaTGGGAACTCCCTGCTTATCCATTCTAAATGTGATAGTTTG
TGTCTACGAACCAGATTTAATGTTTATTAAGCACTATCCTTATGCCAAGTACTTTGCTTG
GGGACTTTCGTGTACATTGCATTGCAGTTAATCCTGGCAACAGTTCACTGGGACAAGACT
ATAATCCCCTTTTATTGTTTAGGAAACAGGCTTAGCAAAGCCAAGTGGAACTCACATAGC
TAGTAAGAACCGGGATTTCTCTGTCATTAAGGTCTCACTGTAATTCATTCTCATTACTTT
GATCCACTAGTCCTCACAACTGCTTCTGAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               cagacacagcgacgccaggtggcagccacgtctgtcaacctacaccacagctcacggccg
tatccttaacccactaatcgaggccaggggttgaacctgagtcctcatggttgctagtca
gatttgtttccgctgagccaTGGGAACTCCCTGCTTATCCATTCTAAATGTGATAGTTTG
TGTCTACGAACCAGATTTAATGTTTATTAAGCACTATCCTTATGCCAAGTACTTTGCTTG
GGGACTTTCGTGTACATTGCATTGCAGTTAATCCTGGCAACAGTTCACTGGGACAAGACT
ATAATCCCCTTTTATTGTTTAGGAAACAGGCTTAGCAAAGCCAAGTGGAACTCACATAGC
TAGTAAGAACCGGGATTTCTCTGTCATTAAGGTCTCACTGTAATTCATTCTCATTACTTT
GATCCACTAGTCCTCACAACTGCTTCTGAAAAAAC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               196-452, gnl|bosTau2|chr8 (33177930-33177673)
               

               
               196-452, gnl|canFam2|chr11 (58275314-58275625)
               

               
               196-452, gnl|dasNov1|scaffold_9559 (90898-91151)
               

               
               196-452, gnl|echTel1|scaffold_238425 (1631-1338)
               

               
               196-452, gnl|hg17|chr9 (97821483-97821813)
               

               
               196-452, gnl|Hg17|chr9 (97821751-97821478)
               

               
               196-452, gnl|loxAfr1|scaffold_5788 (5524-5205)
               

               
               196-452, gnl|mm7|chr4 (46460832-46461068)
               

               
               196-452, gnl|Mm7|chr4 (46461060-46460832)
               

               
               196-452, gnl|oryCun1|scaffold_90030 (7033-6759)
               

               
               196-452, gnl|panTro1|chr11 (82039064-82039395)
               

               
               196-452, gnl|rheMac2|chr15 (38249795-38249469)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-452, gnl|bosTau2|chr8 (33177930-33177673)
               

               
               196-452, gnl|canFam2|chr11 (58275314-58275625)
               

               
               196-452, gnl|dasNov1|scaffold_9559 (90898-91151)
               

               
               196-452, gnl|echTel1|scaffold_238425 (1631-1338)
               

               
               196-452, gnl|hg17|chr9 (97821483-97821813)
               

               
               196-452, gnl|Hg17|chr9 (97821751-97821478)
               

               
               196-452, gnl|loxAfr1|scaffold_5788 (5524-5205)
               

               
               196-452, gnl|mm7|chr4 (46460832-46461068)
               

               
               196-452, gnl|Mm7|chr4 (46461060-46460832)
               

               
               196-452, gnl|oryCun1|scaffold_90030 (7033-6759)
               

               
               196-452, gnl|panTro1|chr11 (82039064-82039395)
               

               
               196-452, gnl|rheMac2|chr15 (38249795-38249469)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	196-452, gnl\|bosTau2\|chr8 (33177930-33177673)
	196-452, gnl\|canFam2\|chr11 (58275314-58275625)
	196-452, gnl\|dasNov1\|scaffold_9559 (90898-91151)
	196-452, gnl\|echTel1\|scaffold_238425 (1631-1338)
	196-452, gnl\|hg17\|chr9 (97821483-97821813)
	196-452, gnl\|Hg17\|chr9 (97821751-97821478)
	196-452, gnl\|loxAfr1\|scaffold_5788 (5524-5205)
	196-452, gnl\|mm7\|chr4 (46460832-46461068)
	196-452, gnl\|Mm7\|chr4 (46461060-46460832)
	196-452, gnl\|oryCun1\|scaffold_90030 (7033-6759)
	196-452, gnl\|panTro1\|chr11 (82039064-82039395)
	196-452, gnl\|rheMac2\|chr15 (38249795-38249469)