Non-Coding RNA Search

rplun0138_i3.y1

Sequence:


               
               TGAAAATCAAGACACAATCTCCACTAAACTGAAGGAATGCTGTGATAAGCCTCTGTTGGA
AAAATCCCACTGCATTGCTGAGGCAAAAAGAGATGAATTGCCTGCAGACCTGAACCCATT
AGAACATGATTTTGTTGAAGATAAGGAAGTTTGTAAAAACTATAAAGAAGCAAAGGATGT
CTTCCTGGGCACGTTTTTGTATGAGTATTCAAGAAGGCACCCAGACTACTCTGTCTCATT
GCTGCTGAGAATTGCCAAGATATATGAAGCCACACTGGAGGACTGCTGTGCCAAAGAGGA
TCCTCCGGCATGCTATGCCACAGTGTTTGATAAATTTCAGCCTCTTGTGGATGAGCCTAA
GAATTTAATCAAACAAAACTGTGAACTTTTTGAAAAACTTGGAGAGTATGGATTCCAAAA
TGCGCTCATAGTTCGTTACACCAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTGGA
GGTCGCAAGAAAACTAGGACTAGTGGGCTCTAGGTGTAGTAAGCGTCCTGAAGAAGAAAG
ACTGTCCTGTGCTGAAGACTATCTGTCCCTGGTCCTGAACCGGTTGTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAATCAAGACACAATCTCCACTAAACTGAAGGAATGCTGTGATAAGCCTCTGTTGGA
AAAATCCCACTGCATTGCTGAGGCAAAAAGAGATGAATTGCCTGCAGACCTGAACCCATT
AGAACATGATTTTGTTGAAGATAAGGAAGTTTGTAAAAACTATAAAGAAGCAAAGGATGT
CTTCCTGGGCACGTTTTTGTATGAGTATTCAAGAAGGCACCCAGACTACTCTGTCTCATT
GCTGCTGAGAATTGCCAAGATATATGAAGCCACACTGGAGGACTGCTGTGCCAAAGAGGA
TCCTCCGGCATGCTATGCCACAGTGTTTGATAAATTTCAGCCTCTTGTGGATGAGCCTAA
GAATTTAATCAAACAAAACTGTGAACTTTTTGAAAAACTTGGAGAGTATGGATTCCAAAA
TGCGCTCATAGTTCGTTACACCAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTGGA
GGTCGCAAGAAAACTAGGACTAGTGGGCTCTAGGTGTAGTAAGCGTCCTGAAGAAGAAAG
ACTGTCCTGTGCTGAAGACTATCTGTCCCTGGTCCTGAACCGGTTGTGCG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-205, gnl|bosTau2|chr28 (25545056-25544852)
               

               
               1-205, gnl|canFam2|chr13 (65098768-65098956)
               

               
               1-205, gnl|dasNov1|scaffold_5878 (42448-42260)
               

               
               1-205, gnl|echTel1|scaffold_52756 (1632-1817)
               

               
               1-205, gnl|hg17|chr4 (74644142-74644330)
               

               
               1-205, gnl|Hg17|chr4 (74644195-74644399)
               

               
               1-205, gnl|loxAfr1|scaffold_50465 (31344-31156)
               

               
               1-205, gnl|mm7|chr5 (90439568-90439754)
               

               
               1-205, gnl|Mm7|chr5 (90439619-90439820)
               

               
               1-205, gnl|monDom2|scaffold_32 (18500324-18500512)
               

               
               1-205, gnl|oryCun1|scaffold_197054 (46498-46310)
               

               
               1-205, gnl|panTro1|chr3 (59067608-59067420)
               

               
               1-205, gnl|rheMac2|chr5 (56263927-56263739)
               

               
               1-205, gnl|rn3|chr14 (19134031-19133845)
               

               
               1-205, gnl|xenTro1|scaffold_1401 (137966-137783)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-205, gnl|bosTau2|chr28 (25545056-25544852)
               

               
               1-205, gnl|canFam2|chr13 (65098768-65098956)
               

               
               1-205, gnl|dasNov1|scaffold_5878 (42448-42260)
               

               
               1-205, gnl|echTel1|scaffold_52756 (1632-1817)
               

               
               1-205, gnl|hg17|chr4 (74644142-74644330)
               

               
               1-205, gnl|Hg17|chr4 (74644195-74644399)
               

               
               1-205, gnl|loxAfr1|scaffold_50465 (31344-31156)
               

               
               1-205, gnl|mm7|chr5 (90439568-90439754)
               

               
               1-205, gnl|Mm7|chr5 (90439619-90439820)
               

               
               1-205, gnl|monDom2|scaffold_32 (18500324-18500512)
               

               
               1-205, gnl|oryCun1|scaffold_197054 (46498-46310)
               

               
               1-205, gnl|panTro1|chr3 (59067608-59067420)
               

               
               1-205, gnl|rheMac2|chr5 (56263927-56263739)
               

               
               1-205, gnl|rn3|chr14 (19134031-19133845)
               

               
               1-205, gnl|xenTro1|scaffold_1401 (137966-137783)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-205, gnl\|bosTau2\|chr28 (25545056-25544852)
	1-205, gnl\|canFam2\|chr13 (65098768-65098956)
	1-205, gnl\|dasNov1\|scaffold_5878 (42448-42260)
	1-205, gnl\|echTel1\|scaffold_52756 (1632-1817)
	1-205, gnl\|hg17\|chr4 (74644142-74644330)
	1-205, gnl\|Hg17\|chr4 (74644195-74644399)
	1-205, gnl\|loxAfr1\|scaffold_50465 (31344-31156)
	1-205, gnl\|mm7\|chr5 (90439568-90439754)
	1-205, gnl\|Mm7\|chr5 (90439619-90439820)
	1-205, gnl\|monDom2\|scaffold_32 (18500324-18500512)
	1-205, gnl\|oryCun1\|scaffold_197054 (46498-46310)
	1-205, gnl\|panTro1\|chr3 (59067608-59067420)
	1-205, gnl\|rheMac2\|chr5 (56263927-56263739)
	1-205, gnl\|rn3\|chr14 (19134031-19133845)
	1-205, gnl\|xenTro1\|scaffold_1401 (137966-137783)