Non-Coding RNA Search

rpro14_h5r1.y1

Sequence:


               
               ATTTAAAAAATGTGGCTCTTAAGGGTTCATGAAATGACTGAATATGAGGATACACGCCCT
GTAGAAAGCAAACGCGCCTCATATACTGCCAAAAATAGTGTTAGTTTCATTAATGTGAAT
TTTCCAGCATTCAGTAGTTGTAATGTTAGAAACAATTGCTGGTCAAGTTCAACTTGTTGC
TATTGTTTTTAATTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCTTGTATCTAGC
TGAATTTTAAACAACAGAACATTAGTTTTTTATGTTGGTGCCACCAACTGTAAATGACAT
AAGTTAGTTATTACAAAACACAGTAATTAGACTGTTGCAACCATCTAAAACCTTAGGCTT
CCAGTCTGTGCTGTTAGTGTTAAGATGTAAAGTGCAATCCTAAGCTAACATTATCTGTGC
AAGCACCATAGAAACATTTGCATATCTGCATAGATCTTACAACTGTACTCTTTACCTCCT
TGTGATAAAGCTTTGTCTACCTGCAAACACAGTCAAAGGCTACAGCTGCAAACCAAAGCC
AACTCTAACCATGGCCAAGAGCTCAAGGACAGAAGCAGCCACATGCTTTGGTCAGCCTTC
TGTAACTTCAATTAGTACAAAGGAACCTTTTCCATGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAAAAAATGTGGCTCTTAAGGGTTCATGAAATGACTGAATATGAGGATACACGCCCT
GTAGAAAGCAAACGCGCCTCATATACTGCCAAAAATAGTGTTAGTTTCATTAATGTGAAT
TTTCCAGCATTCAGTAGTTGTAATGTTAGAAACAATTGCTGGTCAAGTTCAACTTGTTGC
TATTGTTTTTAATTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCTTGTATCTAGC
TGAATTTTAAACAACAGAACATTAGTTTTTTATGTTGGTGCCACCAACTGTAAATGACAT
AAGTTAGTTATTACAAAACACAGTAATTAGACTGTTGCAACCATCTAAAACCTTAGGCTT
CCAGTCTGTGCTGTTAGTGTTAAGATGTAAAGTGCAATCCTAAGCTAACATTATCTGTGC
AAGCACCATAGAAACATTTGCATATCTGCATAGATCTTACAACTGTACTCTTTACCTCCT
TGTGATAAAGCTTTGTCTACCTGCAAACACAGTCAAAGGCTACAGCTGCAAACCAAAGCC
AACTCTAACCATGGCCAAGAGCTCAAGGACAGAAGCAGCCACATGCTTTGGTCAGCCTTC
TGTAACTTCAATTAGTACAAAGGAACCTTTTCCATGAACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               82-241, - strand, RNAz p=0.763647
               

               
               522-640, - strand, RNAz p=0.517536

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-241, - strand, RNAz p=0.763647
               

               
               522-640, - strand, RNAz p=0.517536

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               136-198, + strand, RNAmicro p=0.978745

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               136-198, + strand, RNAmicro p=0.978745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-640, gnl|bosTau2|chr4 (30721684-30721046)
               

               
               2-640, gnl|Hg17|chr7 (113924225-113924862)
               

               
               2-640, gnl|Mm7|chr6 (15380082-15380719)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-640, gnl|bosTau2|chr4 (30721684-30721046)
               

               
               2-640, gnl|Hg17|chr7 (113924225-113924862)
               

               
               2-640, gnl|Mm7|chr6 (15380082-15380719)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	82-241, - strand, RNAz p=0.763647
	522-640, - strand, RNAz p=0.517536

	2-640, gnl\|bosTau2\|chr4 (30721684-30721046)
	2-640, gnl\|Hg17\|chr7 (113924225-113924862)
	2-640, gnl\|Mm7\|chr6 (15380082-15380719)