Non-Coding RNA Search

rpro18_i6r1.y1

Sequence:


               
               CTTTCCCATACCCTTTCATTAGTAAAGGAACAAGCATCTAGGAACCCCTGAAGTTTGGCC
CTTCTTAAGGAGTCTTAGCTGAAGGATTGAATGATTTAAGTTCTTAACCAGAGCATCTGG
CTGGCTTGGTCTCCCGTGGCTTCTATTTCTAGCTCTCCCTCCTCCCTCTTCCTTGTGTGA
CAAAGCTGGAGGGAGGGTTTATTTGAGGGATGTTGGAAAGCTATACATCTTTATGGTCCT
GAATGTTTAGCTCAAAAGGTTAGTGGTATGGAAAAAGTCTCTGGGTTTGGGATCAGAAGA
CCTGAGTTCAAATTCCACCTCTACTTGCGAGTGAAAGTCTCCTCCTGTCCCTGAACATTA
GCTTCTTTAACTGCAAAAACGGGATACAGTATTTACTATACAAGTTTTCTGCTCTTACAG
AGAGTGAACAGGTGGTTGTCAGAGGGGAGGGATGTGGGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCCCATACCCTTTCATTAGTAAAGGAACAAGCATCTAGGAACCCCTGAAGTTTGGCC
CTTCTTAAGGAGTCTTAGCTGAAGGATTGAATGATTTAAGTTCTTAACCAGAGCATCTGG
CTGGCTTGGTCTCCCGTGGCTTCTATTTCTAGCTCTCCCTCCTCCCTCTTCCTTGTGTGA
CAAAGCTGGAGGGAGGGTTTATTTGAGGGATGTTGGAAAGCTATACATCTTTATGGTCCT
GAATGTTTAGCTCAAAAGGTTAGTGGTATGGAAAAAGTCTCTGGGTTTGGGATCAGAAGA
CCTGAGTTCAAATTCCACCTCTACTTGCGAGTGAAAGTCTCCTCCTGTCCCTGAACATTA
GCTTCTTTAACTGCAAAAACGGGATACAGTATTTACTATACAAGTTTTCTGCTCTTACAG
AGAGTGAACAGGTGGTTGTCAGAGGGGAGGGATGTGGGAGCAC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               131-249, - strand, RNAz p=0.776495
               

               
               331-445, - strand, RNAz p=0.600287
               

               
               332-445, - strand, RNAz p=0.681527

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-249, - strand, RNAz p=0.776495
               

               
               331-445, - strand, RNAz p=0.600287
               

               
               332-445, - strand, RNAz p=0.681527

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               53-445, gnl|bosTau2|chr13 (48172322-48171921)
               

               
               53-445, gnl|canFam2|chr24 (25977160-25977456)
               

               
               53-445, gnl|dasNov1|scaffold_56272 (11053-11341)
               

               
               53-445, gnl|echTel1|scaffold_313407 (10447-10716)
               

               
               53-445, gnl|hg17|chr20 (31870913-31871212)
               

               
               53-445, gnl|Hg17|chr20 (31870917-31871303)
               

               
               53-445, gnl|loxAfr1|scaffold_44070 (4822-4520)
               

               
               53-445, gnl|mm7|chr2 (154407205-154407366)
               

               
               53-445, gnl|oryCun1|scaffold_201294 (40721-41013)
               

               
               53-445, gnl|panTro1|chr21 (33839560-33839859)
               

               
               53-445, gnl|rheMac2|chr10 (30788987-30788737)
               

               
               53-445, gnl|rn3|chr3 (145053114-145053356)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-445, gnl|bosTau2|chr13 (48172322-48171921)
               

               
               53-445, gnl|canFam2|chr24 (25977160-25977456)
               

               
               53-445, gnl|dasNov1|scaffold_56272 (11053-11341)
               

               
               53-445, gnl|echTel1|scaffold_313407 (10447-10716)
               

               
               53-445, gnl|hg17|chr20 (31870913-31871212)
               

               
               53-445, gnl|Hg17|chr20 (31870917-31871303)
               

               
               53-445, gnl|loxAfr1|scaffold_44070 (4822-4520)
               

               
               53-445, gnl|mm7|chr2 (154407205-154407366)
               

               
               53-445, gnl|oryCun1|scaffold_201294 (40721-41013)
               

               
               53-445, gnl|panTro1|chr21 (33839560-33839859)
               

               
               53-445, gnl|rheMac2|chr10 (30788987-30788737)
               

               
               53-445, gnl|rn3|chr3 (145053114-145053356)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	131-249, - strand, RNAz p=0.776495
	331-445, - strand, RNAz p=0.600287
	332-445, - strand, RNAz p=0.681527

	53-445, gnl\|bosTau2\|chr13 (48172322-48171921)
	53-445, gnl\|canFam2\|chr24 (25977160-25977456)
	53-445, gnl\|dasNov1\|scaffold_56272 (11053-11341)
	53-445, gnl\|echTel1\|scaffold_313407 (10447-10716)
	53-445, gnl\|hg17\|chr20 (31870913-31871212)
	53-445, gnl\|Hg17\|chr20 (31870917-31871303)
	53-445, gnl\|loxAfr1\|scaffold_44070 (4822-4520)
	53-445, gnl\|mm7\|chr2 (154407205-154407366)
	53-445, gnl\|oryCun1\|scaffold_201294 (40721-41013)
	53-445, gnl\|panTro1\|chr21 (33839560-33839859)
	53-445, gnl\|rheMac2\|chr10 (30788987-30788737)
	53-445, gnl\|rn3\|chr3 (145053114-145053356)