Non-Coding RNA Search

rpro18_n8r1.y1

Sequence:


               
               TCTGTGTGAGTACCAGCATGTAATGTGTTTTAAAAACATACACATTTCTATAAATTACCT
GCACAGACTTAGACCTTGTGAAATGTAGGTTAGCTCCCTTTTACAAAGAGAAGATAGATA
CGCTTCAGCATTTTGGAGAATAGTTTTGAACTCAAAGTTTCATGTTTCAATGCCAAGTTC
TTATATTAAAAAATAAACACTACTTTTAAGAGAGAGGTGCATTAATAAAACAGAAAACAA
AACTTTAAAGAAATGAAAGAAGAACCCCTCTTCTGGTACTTACATGAAGATTATTTTCCC
CTGTTATAAAAATAGGCAGATATCTGGTGTGTGTATTTCTTTATTCTCTGGGTTTTGGTC
TGGCCTTGCCCTCAGGGCCAAACATTGATTAAAAAGAGAACCTTCTAGCCATTTTGGCAT
TGATGGCTTTTTATACCAGTGTGTCCAATTAGATTTGCTAGGCTCACTGACATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGTGAGTACCAGCATGTAATGTGTTTTAAAAACATACACATTTCTATAAATTACCT
GCACAGACTTAGACCTTGTGAAATGTAGGTTAGCTCCCTTTTACAAAGAGAAGATAGATA
CGCTTCAGCATTTTGGAGAATAGTTTTGAACTCAAAGTTTCATGTTTCAATGCCAAGTTC
TTATATTAAAAAATAAACACTACTTTTAAGAGAGAGGTGCATTAATAAAACAGAAAACAA
AACTTTAAAGAAATGAAAGAAGAACCCCTCTTCTGGTACTTACATGAAGATTATTTTCCC
CTGTTATAAAAATAGGCAGATATCTGGTGTGTGTATTTCTTTATTCTCTGGGTTTTGGTC
TGGCCTTGCCCTCAGGGCCAAACATTGATTAAAAAGAGAACCTTCTAGCCATTTTGGCAT
TGATGGCTTTTTATACCAGTGTGTCCAATTAGATTTGCTAGGCTCACTGACATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-475, + strand, RNAz p=0.960449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-475, + strand, RNAz p=0.960449

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-475, gnl|bosTau2|chr19 (33001144-33001623)
               

               
               1-475, gnl|Hg17|chr17 (34942623-34943102)
               

               
               1-475, gnl|Mm7|chr11 (98360954-98361386)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr19 (33001144-33001623)
               

               
               1-475, gnl|Hg17|chr17 (34942623-34943102)
               

               
               1-475, gnl|Mm7|chr11 (98360954-98361386)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	1-475, gnl\|bosTau2\|chr19 (33001144-33001623)
	1-475, gnl\|Hg17\|chr17 (34942623-34943102)
	1-475, gnl\|Mm7\|chr11 (98360954-98361386)