Non-Coding RNA Search

rpro25_e21r1.y1

Sequence:


               
               TCTGGTCATCTCTCCGATGCAGCCTCTATGTGGGAGCCCCTAGTGGCGTCATCCAGCTAC
CACTGTCTAGCTGCTCACGCTACCGTTCCTGCTACGACTGCATCCTGGCCCGGGACCCCT
ACTGTGGCTGGGATCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGTCATCTCTCCGATGCAGCCTCTATGTGGGAGCCCCTAGTGGCGTCATCCAGCTAC
CACTGTCTAGCTGCTCACGCTACCGTTCCTGCTACGACTGCATCCTGGCCCGGGACCCCT
ACTGTGGCTGGGATCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               21-138, - strand, RNAz p=0.782787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-138, - strand, RNAz p=0.782787

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               21-138, gnl|bosTau2|chr26 (13387010-13387127)
               

               
               21-138, gnl|canFam2|chr28 (16665805-16665942)
               

               
               21-138, gnl|danRer3|chr12 (31280220-31280080)
               

               
               21-138, gnl|dasNov1|scaffold_88822 (5753-5894)
               

               
               21-138, gnl|echTel1|scaffold_277702 (3241-3382)
               

               
               21-138, gnl|fr1|chrUn (50075677-50075797)
               

               
               21-138, gnl|galGal2|chr6 (22164892-22164733)
               

               
               21-138, gnl|hg17|chr10 (102730566-102730707)
               

               
               21-138, gnl|Hg17|chr10 (102730572-102730689)
               

               
               21-138, gnl|loxAfr1|scaffold_106177 (3702-3843)
               

               
               21-138, gnl|mm7|chr19 (44892748-44892889)
               

               
               21-138, gnl|Mm7|chr19 (44892754-44892871)
               

               
               21-138, gnl|monDom2|scaffold_14 (62705691-62705550)
               

               
               21-138, gnl|oryCun1|scaffold_211698 (156021-156162)
               

               
               21-138, gnl|panTro1|chr8_random (3371708-3371849)
               

               
               21-138, gnl|rheMac2|chr9 (100591777-100591918)
               

               
               21-138, gnl|rn3|chr1 (250324573-250324714)
               

               
               21-138, gnl|tetNig1|chr2 (907670-907790)
               

               
               21-138, gnl|xenTro1|scaffold_87 (194271-194152)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-138, gnl|bosTau2|chr26 (13387010-13387127)
               

               
               21-138, gnl|canFam2|chr28 (16665805-16665942)
               

               
               21-138, gnl|danRer3|chr12 (31280220-31280080)
               

               
               21-138, gnl|dasNov1|scaffold_88822 (5753-5894)
               

               
               21-138, gnl|echTel1|scaffold_277702 (3241-3382)
               

               
               21-138, gnl|fr1|chrUn (50075677-50075797)
               

               
               21-138, gnl|galGal2|chr6 (22164892-22164733)
               

               
               21-138, gnl|hg17|chr10 (102730566-102730707)
               

               
               21-138, gnl|Hg17|chr10 (102730572-102730689)
               

               
               21-138, gnl|loxAfr1|scaffold_106177 (3702-3843)
               

               
               21-138, gnl|mm7|chr19 (44892748-44892889)
               

               
               21-138, gnl|Mm7|chr19 (44892754-44892871)
               

               
               21-138, gnl|monDom2|scaffold_14 (62705691-62705550)
               

               
               21-138, gnl|oryCun1|scaffold_211698 (156021-156162)
               

               
               21-138, gnl|panTro1|chr8_random (3371708-3371849)
               

               
               21-138, gnl|rheMac2|chr9 (100591777-100591918)
               

               
               21-138, gnl|rn3|chr1 (250324573-250324714)
               

               
               21-138, gnl|tetNig1|chr2 (907670-907790)
               

               
               21-138, gnl|xenTro1|scaffold_87 (194271-194152)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	21-138, gnl\|bosTau2\|chr26 (13387010-13387127)
	21-138, gnl\|canFam2\|chr28 (16665805-16665942)
	21-138, gnl\|danRer3\|chr12 (31280220-31280080)
	21-138, gnl\|dasNov1\|scaffold_88822 (5753-5894)
	21-138, gnl\|echTel1\|scaffold_277702 (3241-3382)
	21-138, gnl\|fr1\|chrUn (50075677-50075797)
	21-138, gnl\|galGal2\|chr6 (22164892-22164733)
	21-138, gnl\|hg17\|chr10 (102730566-102730707)
	21-138, gnl\|Hg17\|chr10 (102730572-102730689)
	21-138, gnl\|loxAfr1\|scaffold_106177 (3702-3843)
	21-138, gnl\|mm7\|chr19 (44892748-44892889)
	21-138, gnl\|Mm7\|chr19 (44892754-44892871)
	21-138, gnl\|monDom2\|scaffold_14 (62705691-62705550)
	21-138, gnl\|oryCun1\|scaffold_211698 (156021-156162)
	21-138, gnl\|panTro1\|chr8_random (3371708-3371849)
	21-138, gnl\|rheMac2\|chr9 (100591777-100591918)
	21-138, gnl\|rn3\|chr1 (250324573-250324714)
	21-138, gnl\|tetNig1\|chr2 (907670-907790)
	21-138, gnl\|xenTro1\|scaffold_87 (194271-194152)