Non-Coding RNA Search

rpro32_j9.y1

Sequence:


               
               ACCAGTGTTCCCGATCCGCCCGACAGTCCTCAAGCCCATCATGCCAACTCAGGCTTGATG
TGTTTATTCATCAGCTTGCCGAGCCTAGAGCGAGGGTGGCCTGGTCCATTATAACACTGA
AATTTGTATATCCCGTAAAGAAATGGCTCACAGCTGAATCATATGCAAATGTTTCTAATC
TTTGTTTCTGGCGAAGCAGCTTAGCTGAAGTCATGCTCTGGAACTCATCATAAAAGTGTG
CCTTGGTGCTGCCCCTGCCTAGGCTGGACCTTGGCCTGAGGTGCCTGGGAGCAGAGCAAG
AGAAAGCCAAGCTGGACAGCTTCCCCAGAGCAAGCCATTATTTTATAAGAATGACTCACT
TAACCACATGGCTAACTTCAAAGGTTTTGACTTTTATTGGGGGTGAGGGGAAGACCCAGG
GGGAGAGGCCGTCGTAGGAAGGGGAAGTTTCAGATCAAAGCATTTGAGTGCCGAGGCAGG
TCAGCCATTCCACAGCTTGCTCCCCACGCACTAGGGACTGGCAGAAGAGGCTGAAAAAAA
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGTGTTCCCGATCCGCCCGACAGTCCTCAAGCCCATCATGCCAACTCAGGCTTGATG
TGTTTATTCATCAGCTTGCCGAGCCTAGAGCGAGGGTGGCCTGGTCCATTATAACACTGA
AATTTGTATATCCCGTAAAGAAATGGCTCACAGCTGAATCATATGCAAATGTTTCTAATC
TTTGTTTCTGGCGAAGCAGCTTAGCTGAAGTCATGCTCTGGAACTCATCATAAAAGTGTG
CCTTGGTGCTGCCCCTGCCTAGGCTGGACCTTGGCCTGAGGTGCCTGGGAGCAGAGCAAG
AGAAAGCCAAGCTGGACAGCTTCCCCAGAGCAAGCCATTATTTTATAAGAATGACTCACT
TAACCACATGGCTAACTTCAAAGGTTTTGACTTTTATTGGGGGTGAGGGGAAGACCCAGG
GGGAGAGGCCGTCGTAGGAAGGGGAAGTTTCAGATCAAAGCATTTGAGTGCCGAGGCAGG
TCAGCCATTCCACAGCTTGCTCCCCACGCACTAGGGACTGGCAGAAGAGGCTGAAAAAAA
AAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-341, - strand, RNAz p=0.830499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-341, - strand, RNAz p=0.830499

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-540, gnl|bosTau2|chr15 (40419866-40419330)
               

               
               2-540, gnl|Hg17|chr11 (34632081-34632608)
               

               
               2-540, gnl|Mm7|chr2 (103122599-103122044)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-540, gnl|bosTau2|chr15 (40419866-40419330)
               

               
               2-540, gnl|Hg17|chr11 (34632081-34632608)
               

               
               2-540, gnl|Mm7|chr2 (103122599-103122044)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	2-540, gnl\|bosTau2\|chr15 (40419866-40419330)
	2-540, gnl\|Hg17\|chr11 (34632081-34632608)
	2-540, gnl\|Mm7\|chr2 (103122599-103122044)