Non-Coding RNA Search

rptbr0111_f12.y1

Sequence:


               
               AAATTATAATGCCAAGCTATAACGTCACACCCTCGAATTACAACTGGTTTTATATGGCGT
GTCTATAATGTTGAAAATCCATGTACTATATAATAATTCAGAAGGGCTCTGTGCACTACA
CAGATTACATTGTTCAATCATCAGCTGCTAATAGCCTAAGATTATTTTTTTTCCTTAAGC
CTATGGAACCAGCTCGGCTGTCCTAGTGGCTGAAAGTAGATGAACTTCTGGAAGAACAAA
GAGAGAAAGAAATCTAATTTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTATAATGCCAAGCTATAACGTCACACCCTCGAATTACAACTGGTTTTATATGGCGT
GTCTATAATGTTGAAAATCCATGTACTATATAATAATTCAGAAGGGCTCTGTGCACTACA
CAGATTACATTGTTCAATCATCAGCTGCTAATAGCCTAAGATTATTTTTTTTCCTTAAGC
CTATGGAACCAGCTCGGCTGTCCTAGTGGCTGAAAGTAGATGAACTTCTGGAAGAACAAA
GAGAGAAAGAAATCTAATTTCCAT

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-252, gnl|bosTau2|chr4 (38362597-38362853)
               

               
               1-252, gnl|canFam2|chr14 (44841286-44841700)
               

               
               1-252, gnl|dasNov1|scaffold_17 (346891-347292)
               

               
               1-252, gnl|echTel1|scaffold_305059 (18427-18844)
               

               
               1-252, gnl|galGal2|chr2 (32631763-32632158)
               

               
               1-252, gnl|hg17|chr7 (28632855-28633271)
               

               
               1-252, gnl|Hg17|chr7 (28633107-28633363)
               

               
               1-252, gnl|loxAfr1|scaffold_4670 (70298-69889)
               

               
               1-252, gnl|mm7|chr6 (53658187-53658586)
               

               
               1-252, gnl|Mm7|chr6 (53658424-53658677)
               

               
               1-252, gnl|monDom2|scaffold_7 (91351829-91351411)
               

               
               1-252, gnl|oryCun1|scaffold_198116 (266323-266733)
               

               
               1-252, gnl|panTro1|chr6 (29766033-29766451)
               

               
               1-252, gnl|rheMac2|chr3 (97383768-97383352)
               

               
               1-252, gnl|rn3|chr4 (82316882-82317286)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr4 (38362597-38362853)
               

               
               1-252, gnl|canFam2|chr14 (44841286-44841700)
               

               
               1-252, gnl|dasNov1|scaffold_17 (346891-347292)
               

               
               1-252, gnl|echTel1|scaffold_305059 (18427-18844)
               

               
               1-252, gnl|galGal2|chr2 (32631763-32632158)
               

               
               1-252, gnl|hg17|chr7 (28632855-28633271)
               

               
               1-252, gnl|Hg17|chr7 (28633107-28633363)
               

               
               1-252, gnl|loxAfr1|scaffold_4670 (70298-69889)
               

               
               1-252, gnl|mm7|chr6 (53658187-53658586)
               

               
               1-252, gnl|Mm7|chr6 (53658424-53658677)
               

               
               1-252, gnl|monDom2|scaffold_7 (91351829-91351411)
               

               
               1-252, gnl|oryCun1|scaffold_198116 (266323-266733)
               

               
               1-252, gnl|panTro1|chr6 (29766033-29766451)
               

               
               1-252, gnl|rheMac2|chr3 (97383768-97383352)
               

               
               1-252, gnl|rn3|chr4 (82316882-82317286)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-252, gnl\|bosTau2\|chr4 (38362597-38362853)
	1-252, gnl\|canFam2\|chr14 (44841286-44841700)
	1-252, gnl\|dasNov1\|scaffold_17 (346891-347292)
	1-252, gnl\|echTel1\|scaffold_305059 (18427-18844)
	1-252, gnl\|galGal2\|chr2 (32631763-32632158)
	1-252, gnl\|hg17\|chr7 (28632855-28633271)
	1-252, gnl\|Hg17\|chr7 (28633107-28633363)
	1-252, gnl\|loxAfr1\|scaffold_4670 (70298-69889)
	1-252, gnl\|mm7\|chr6 (53658187-53658586)
	1-252, gnl\|Mm7\|chr6 (53658424-53658677)
	1-252, gnl\|monDom2\|scaffold_7 (91351829-91351411)
	1-252, gnl\|oryCun1\|scaffold_198116 (266323-266733)
	1-252, gnl\|panTro1\|chr6 (29766033-29766451)
	1-252, gnl\|rheMac2\|chr3 (97383768-97383352)
	1-252, gnl\|rn3\|chr4 (82316882-82317286)