Non-Coding RNA Search

rptbr0115_m22.y1

Sequence:


               
               ATTTAAATTTAATTTAATTTTCTAAACAAAAAAGGGTTGGGAAAGAATTCTCCTTTTTAC
TCTGTAAGTCCTGCAACTGATGTTTTATTTTTCATGACTGAGAGATTGTGTCTATAAGTG
CACAATGACATGGTGGAACAAAATAGAAACTTTGAGACTTAGGGAGAACCAGTTAACTTA
AAACTTATTTTCAGTTTCTTCTTCCAGTGTTAGGAATGGGCTAACAATGGATCATTAGGT
CAAGAAGAAACAAGATAATTGTTGACCTTCTGAGATGAAAGGGAATACCAGAAATATTAC
TAAACAAATTTGGCAGATAGCCTGAATAGATGTTTACTTCTATACACAGGACAGTGTACA
ATTTTTTGTAAAGCCTGTTGTTTTTGGAAGTATTTATGGTGAGCTTTCTTAAAAATTATT
ATAGTATGTACTTCCGAAATCCAACGTATTCTTTTTTTTTTTAAGCTTTATCATTTTTAT
TTTTCATGGTAAAAATTTGATACTGGGGTAGATATTCCCTGTACCTTATAGTACCATTCC
TCCAAATAATCTTCTATTAAAGGAGGCAAAGAACCATGGTTGAGAATAGTTAAGCTGTGC
ATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAAATTTAATTTAATTTTCTAAACAAAAAAGGGTTGGGAAAGAATTCTCCTTTTTAC
TCTGTAAGTCCTGCAACTGATGTTTTATTTTTCATGACTGAGAGATTGTGTCTATAAGTG
CACAATGACATGGTGGAACAAAATAGAAACTTTGAGACTTAGGGAGAACCAGTTAACTTA
AAACTTATTTTCAGTTTCTTCTTCCAGTGTTAGGAATGGGCTAACAATGGATCATTAGGT
CAAGAAGAAACAAGATAATTGTTGACCTTCTGAGATGAAAGGGAATACCAGAAATATTAC
TAAACAAATTTGGCAGATAGCCTGAATAGATGTTTACTTCTATACACAGGACAGTGTACA
ATTTTTTGTAAAGCCTGTTGTTTTTGGAAGTATTTATGGTGAGCTTTCTTAAAAATTATT
ATAGTATGTACTTCCGAAATCCAACGTATTCTTTTTTTTTTTAAGCTTTATCATTTTTAT
TTTTCATGGTAAAAATTTGATACTGGGGTAGATATTCCCTGTACCTTATAGTACCATTCC
TCCAAATAATCTTCTATTAAAGGAGGCAAAGAACCATGGTTGAGAATAGTTAAGCTGTGC
ATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               445-597, + strand, RNAz p=0.976357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               445-597, + strand, RNAz p=0.976357

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC071729, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC071729, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-604, gnl|bosTau2|chr29 (29027081-29027697)
               

               
               4-604, gnl|Hg17|chr11 (129609041-129608436)
               

               
               4-604, gnl|Mm7|chr9 (30968645-30969198)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-604, gnl|bosTau2|chr29 (29027081-29027697)
               

               
               4-604, gnl|Hg17|chr11 (129609041-129608436)
               

               
               4-604, gnl|Mm7|chr9 (30968645-30969198)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	4-604, gnl\|bosTau2\|chr29 (29027081-29027697)
	4-604, gnl\|Hg17\|chr11 (129609041-129608436)
	4-604, gnl\|Mm7\|chr9 (30968645-30969198)