Non-Coding RNA Search

rptbr0117_e19.y1

Sequence:


               
               AAGGAACGTCAACAAAGAGCACAATAGTAACTTTAAAGCCGGGTATATTCCAATCGATGC
AAGATCGCCTGCATAAGACAGGGCTGAGAGGGAGAAAGGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAACGTCAACAAAGAGCACAATAGTAACTTTAAAGCCGGGTATATTCCAATCGATGC
AAGATCGCCTGCATAAGACAGGGCTGAGAGGGAGAAAGGGCAA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-103, gnl|bosTau2|chr6 (37362578-37362477)
               

               
               1-103, gnl|canFam2|chr13 (47914798-47915026)
               

               
               1-103, gnl|dasNov1|scaffold_104968 (5093-4865)
               

               
               1-103, gnl|fr1|chrUn (37550887-37550665)
               

               
               1-103, gnl|galGal2|chr4 (66641343-66641125)
               

               
               1-103, gnl|hg17|chr4 (52740519-52740747)
               

               
               1-103, gnl|Hg17|chr4 (52740681-52740580)
               

               
               1-103, gnl|mm7|chr5 (73019048-73019276)
               

               
               1-103, gnl|Mm7|chr5 (73019210-73019109)
               

               
               1-103, gnl|monDom2|scaffold_26 (15779627-15779856)
               

               
               1-103, gnl|oryCun1|scaffold_165985 (290-518)
               

               
               1-103, gnl|panTro1|chr3 (93964751-93964523)
               

               
               1-103, gnl|rheMac2|chr5 (77350512-77350284)
               

               
               1-103, gnl|rn3|chr14 (36965868-36965640)
               

               
               1-103, gnl|tetNig1|chr1_random (1883332-1883560)
               

               
               1-103, gnl|xenTro1|scaffold_248 (89704-89926)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-103, gnl|bosTau2|chr6 (37362578-37362477)
               

               
               1-103, gnl|canFam2|chr13 (47914798-47915026)
               

               
               1-103, gnl|dasNov1|scaffold_104968 (5093-4865)
               

               
               1-103, gnl|fr1|chrUn (37550887-37550665)
               

               
               1-103, gnl|galGal2|chr4 (66641343-66641125)
               

               
               1-103, gnl|hg17|chr4 (52740519-52740747)
               

               
               1-103, gnl|Hg17|chr4 (52740681-52740580)
               

               
               1-103, gnl|mm7|chr5 (73019048-73019276)
               

               
               1-103, gnl|Mm7|chr5 (73019210-73019109)
               

               
               1-103, gnl|monDom2|scaffold_26 (15779627-15779856)
               

               
               1-103, gnl|oryCun1|scaffold_165985 (290-518)
               

               
               1-103, gnl|panTro1|chr3 (93964751-93964523)
               

               
               1-103, gnl|rheMac2|chr5 (77350512-77350284)
               

               
               1-103, gnl|rn3|chr14 (36965868-36965640)
               

               
               1-103, gnl|tetNig1|chr1_random (1883332-1883560)
               

               
               1-103, gnl|xenTro1|scaffold_248 (89704-89926)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-103, gnl\|bosTau2\|chr6 (37362578-37362477)
	1-103, gnl\|canFam2\|chr13 (47914798-47915026)
	1-103, gnl\|dasNov1\|scaffold_104968 (5093-4865)
	1-103, gnl\|fr1\|chrUn (37550887-37550665)
	1-103, gnl\|galGal2\|chr4 (66641343-66641125)
	1-103, gnl\|hg17\|chr4 (52740519-52740747)
	1-103, gnl\|Hg17\|chr4 (52740681-52740580)
	1-103, gnl\|mm7\|chr5 (73019048-73019276)
	1-103, gnl\|Mm7\|chr5 (73019210-73019109)
	1-103, gnl\|monDom2\|scaffold_26 (15779627-15779856)
	1-103, gnl\|oryCun1\|scaffold_165985 (290-518)
	1-103, gnl\|panTro1\|chr3 (93964751-93964523)
	1-103, gnl\|rheMac2\|chr5 (77350512-77350284)
	1-103, gnl\|rn3\|chr14 (36965868-36965640)
	1-103, gnl\|tetNig1\|chr1_random (1883332-1883560)
	1-103, gnl\|xenTro1\|scaffold_248 (89704-89926)