Non-Coding RNA Search

rptbr0122_o13.y1

Sequence:


               
               TCTGGGCACTAAGCAGTATCAAGAGCCAACATCCAAATGTGATTCACTTGGAGGAATGCA
TCCTACAAAAAGATGGGATGGTGCAAAAGATGTCCCACGGCTCTAATTCTTCCCTTTATT
TACAGGTTTTATTATGTATGCCTTCTCCAGAATAAACTGAGGATGCAGAGTACTTGGTGC
AATGGAACAGCAGAGGGGAAATAGGAGACAGAAAACATTAATTCTGCTTGTGATGAGTAG
TAATGAGTAGGAAGGTGAGCATCAGGAATTGTGGCTGCTTCTGATTCTGCCACCTCCTGA
TATAGCCTTTGCAGACAGGTAAATTTTGTTTTATATTTAGAGATTATTTTTTTATTTGAA
TCTTAAAACTATATTTGTGTTTACTAGCCTTTCCTTCTTAGTTTACAATGCATTTTCACA
TGGATTTTACATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGGCACTAAGCAGTATCAAGAGCCAACATCCAAATGTGATTCACTTGGAGGAATGCA
TCCTACAAAAAGATGGGATGGTGCAAAAGATGTCCCACGGCTCTAATTCTTCCCTTTATT
TACAGGTTTTATTATGTATGCCTTCTCCAGAATAAACTGAGGATGCAGAGTACTTGGTGC
AATGGAACAGCAGAGGGGAAATAGGAGACAGAAAACATTAATTCTGCTTGTGATGAGTAG
TAATGAGTAGGAAGGTGAGCATCAGGAATTGTGGCTGCTTCTGATTCTGCCACCTCCTGA
TATAGCCTTTGCAGACAGGTAAATTTTGTTTTATATTTAGAGATTATTTTTTTATTTGAA
TCTTAAAACTATATTTGTGTTTACTAGCCTTTCCTTCTTAGTTTACAATGCATTTTCACA
TGGATTTTACATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-127, + strand, RNAz p=0.668784

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-127, + strand, RNAz p=0.668784

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-127, gnl|bosTau2|chr2 (79709934-79709808)
               

               
               1-127, gnl|canFam2|chr2 (76751685-76751396)
               

               
               1-127, gnl|danRer3|chr23 (55056762-55057024)
               

               
               1-127, gnl|dasNov1|scaffold_35897 (5274-5563)
               

               
               1-127, gnl|echTel1|scaffold_312676 (7479-7768)
               

               
               1-127, gnl|fr1|chrUn (197615574-197615285)
               

               
               1-127, gnl|galGal2|chr23 (2802713-2802424)
               

               
               1-127, gnl|hg17|chr1 (26124940-26125229)
               

               
               1-127, gnl|Hg17|chr1 (26125102-26125228)
               

               
               1-127, gnl|loxAfr1|scaffold_4591 (54059-53770)
               

               
               1-127, gnl|mm7|chr4 (133662967-133662678)
               

               
               1-127, gnl|Mm7|chr4 (133662803-133662677)
               

               
               1-127, gnl|monDom2|scaffold_91 (3616324-3616613)
               

               
               1-127, gnl|oryCun1|scaffold_201504 (5013-5302)
               

               
               1-127, gnl|panTro1|chr1 (26812559-26812848)
               

               
               1-127, gnl|rheMac2|chr1 (28731912-28732201)
               

               
               1-127, gnl|rn3|chr5 (153039566-153039277)
               

               
               1-127, gnl|tetNig1|chrUn_random (134933448-134933737)
               

               
               1-127, gnl|xenTro1|scaffold_654 (100792-100503)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr2 (79709934-79709808)
               

               
               1-127, gnl|canFam2|chr2 (76751685-76751396)
               

               
               1-127, gnl|danRer3|chr23 (55056762-55057024)
               

               
               1-127, gnl|dasNov1|scaffold_35897 (5274-5563)
               

               
               1-127, gnl|echTel1|scaffold_312676 (7479-7768)
               

               
               1-127, gnl|fr1|chrUn (197615574-197615285)
               

               
               1-127, gnl|galGal2|chr23 (2802713-2802424)
               

               
               1-127, gnl|hg17|chr1 (26124940-26125229)
               

               
               1-127, gnl|Hg17|chr1 (26125102-26125228)
               

               
               1-127, gnl|loxAfr1|scaffold_4591 (54059-53770)
               

               
               1-127, gnl|mm7|chr4 (133662967-133662678)
               

               
               1-127, gnl|Mm7|chr4 (133662803-133662677)
               

               
               1-127, gnl|monDom2|scaffold_91 (3616324-3616613)
               

               
               1-127, gnl|oryCun1|scaffold_201504 (5013-5302)
               

               
               1-127, gnl|panTro1|chr1 (26812559-26812848)
               

               
               1-127, gnl|rheMac2|chr1 (28731912-28732201)
               

               
               1-127, gnl|rn3|chr5 (153039566-153039277)
               

               
               1-127, gnl|tetNig1|chrUn_random (134933448-134933737)
               

               
               1-127, gnl|xenTro1|scaffold_654 (100792-100503)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-127, gnl\|bosTau2\|chr2 (79709934-79709808)
	1-127, gnl\|canFam2\|chr2 (76751685-76751396)
	1-127, gnl\|danRer3\|chr23 (55056762-55057024)
	1-127, gnl\|dasNov1\|scaffold_35897 (5274-5563)
	1-127, gnl\|echTel1\|scaffold_312676 (7479-7768)
	1-127, gnl\|fr1\|chrUn (197615574-197615285)
	1-127, gnl\|galGal2\|chr23 (2802713-2802424)
	1-127, gnl\|hg17\|chr1 (26124940-26125229)
	1-127, gnl\|Hg17\|chr1 (26125102-26125228)
	1-127, gnl\|loxAfr1\|scaffold_4591 (54059-53770)
	1-127, gnl\|mm7\|chr4 (133662967-133662678)
	1-127, gnl\|Mm7\|chr4 (133662803-133662677)
	1-127, gnl\|monDom2\|scaffold_91 (3616324-3616613)
	1-127, gnl\|oryCun1\|scaffold_201504 (5013-5302)
	1-127, gnl\|panTro1\|chr1 (26812559-26812848)
	1-127, gnl\|rheMac2\|chr1 (28731912-28732201)
	1-127, gnl\|rn3\|chr5 (153039566-153039277)
	1-127, gnl\|tetNig1\|chrUn_random (134933448-134933737)
	1-127, gnl\|xenTro1\|scaffold_654 (100792-100503)