Non-Coding RNA Search

rptbr0123_g22.y1

Sequence:


               
               CCCCTGAGCCCGTCCCAAACGGGAGCCGAAAGTCGGTGCTTGGAAGAATAAGCAGGAAAT
GGCGGACGAGGCGTATGTTTTTTGCTTCTGCATAACGAGATGGTGTCTGGAGTGTACAAG
TCCGCGGAGCAGGGGGAGGTGGAAAATGGACGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTGAGCCCGTCCCAAACGGGAGCCGAAAGTCGGTGCTTGGAAGAATAAGCAGGAAAT
GGCGGACGAGGCGTATGTTTTTTGCTTCTGCATAACGAGATGGTGTCTGGAGTGTACAAG
TCCGCGGAGCAGGGGGAGGTGGAAAATGGACGCTG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-142, gnl|bosTau2|chr21 (33604507-33604645)
               

               
               2-142, gnl|canFam2|chr8 (20355959-20356104)
               

               
               2-142, gnl|dasNov1|scaffold_119273 (1572-1428)
               

               
               2-142, gnl|echTel1|scaffold_309636 (42548-42690)
               

               
               2-142, gnl|galGal2|chr5 (34465657-34465773)
               

               
               2-142, gnl|hg17|chr14 (38708965-38709109)
               

               
               2-142, gnl|Hg17|chr14 (38709106-38708969)
               

               
               2-142, gnl|loxAfr1|scaffold_12857 (3654-3799)
               

               
               2-142, gnl|mm7|chr12 (56996045-56996186)
               

               
               2-142, gnl|Mm7|chr12 (56996184-56996049)
               

               
               2-142, gnl|monDom2|scaffold_8 (89358787-89358651)
               

               
               2-142, gnl|panTro1|chr15 (38063022-38063166)
               

               
               2-142, gnl|rheMac2|chr7 (102146821-102146965)
               

               
               2-142, gnl|rn3|chr6 (79755667-79755808)
               

               
               2-142, gnl|xenTro1|scaffold_33 (2413089-2412942)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-142, gnl|bosTau2|chr21 (33604507-33604645)
               

               
               2-142, gnl|canFam2|chr8 (20355959-20356104)
               

               
               2-142, gnl|dasNov1|scaffold_119273 (1572-1428)
               

               
               2-142, gnl|echTel1|scaffold_309636 (42548-42690)
               

               
               2-142, gnl|galGal2|chr5 (34465657-34465773)
               

               
               2-142, gnl|hg17|chr14 (38708965-38709109)
               

               
               2-142, gnl|Hg17|chr14 (38709106-38708969)
               

               
               2-142, gnl|loxAfr1|scaffold_12857 (3654-3799)
               

               
               2-142, gnl|mm7|chr12 (56996045-56996186)
               

               
               2-142, gnl|Mm7|chr12 (56996184-56996049)
               

               
               2-142, gnl|monDom2|scaffold_8 (89358787-89358651)
               

               
               2-142, gnl|panTro1|chr15 (38063022-38063166)
               

               
               2-142, gnl|rheMac2|chr7 (102146821-102146965)
               

               
               2-142, gnl|rn3|chr6 (79755667-79755808)
               

               
               2-142, gnl|xenTro1|scaffold_33 (2413089-2412942)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	2-142, gnl\|bosTau2\|chr21 (33604507-33604645)
	2-142, gnl\|canFam2\|chr8 (20355959-20356104)
	2-142, gnl\|dasNov1\|scaffold_119273 (1572-1428)
	2-142, gnl\|echTel1\|scaffold_309636 (42548-42690)
	2-142, gnl\|galGal2\|chr5 (34465657-34465773)
	2-142, gnl\|hg17\|chr14 (38708965-38709109)
	2-142, gnl\|Hg17\|chr14 (38709106-38708969)
	2-142, gnl\|loxAfr1\|scaffold_12857 (3654-3799)
	2-142, gnl\|mm7\|chr12 (56996045-56996186)
	2-142, gnl\|Mm7\|chr12 (56996184-56996049)
	2-142, gnl\|monDom2\|scaffold_8 (89358787-89358651)
	2-142, gnl\|panTro1\|chr15 (38063022-38063166)
	2-142, gnl\|rheMac2\|chr7 (102146821-102146965)
	2-142, gnl\|rn3\|chr6 (79755667-79755808)
	2-142, gnl\|xenTro1\|scaffold_33 (2413089-2412942)