rptbr0126_i3.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTCCAGCATCGTCACCCAACAAAATCAGGTATATGTGGTCGGAGGACTATATGTGGA TGAAGAAAATAAAGATCAGCCTCTACAGTCATACTTCTTCCAGCTTGATAACATAGCATC TGAGTGGGTTGGACTTCCACCTCTGCCTTCGGCCAGGTGTCTCTTCGGTCTGGGAGAGGT AGATGAGAAAATCTATGTAGTCGCAGGCAAAGACCTTCAAACAGAGGCTTCGCTGGATTC AGTATTATGCTATGATCCTGTGACGGCAAAATGGAATGAAGTTAAAAAACTTCCTATCAA AGTCTATGGCCATAGTGTGATTTCACATAAGGGAATGATATATTGTCTTGGAGGAAAGAC AGATGACAAAAAGTGTACAAACAGGGTGTTTATCTACAACCCCAAAAAAGGAGATTGGAA AGATCTAGCTCCAATGAAAACCCCTCGTTCCATGTTTGGAGTAGCGGTCCATAAAGGCAA AATTGTGATTGCTGGGGGTGTCACCGAAGATGGTCTTTCAGCTTCAGTTGAGGCTTTTGA CCTTACCACCAACAAGTGGGAAGTAATGACTGAATTTCCCCAAGAAAGAAGCTCCATCAG TCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTCCAGCATCGTCACCCAACAAAATCAGGTATATGTGGTCGGAGGACTATATGTGGA TGAAGAAAATAAAGATCAGCCTCTACAGTCATACTTCTTCCAGCTTGATAACATAGCATC TGAGTGGGTTGGACTTCCACCTCTGCCTTCGGCCAGGTGTCTCTTCGGTCTGGGAGAGGT AGATGAGAAAATCTATGTAGTCGCAGGCAAAGACCTTCAAACAGAGGCTTCGCTGGATTC AGTATTATGCTATGATCCTGTGACGGCAAAATGGAATGAAGTTAAAAAACTTCCTATCAA AGTCTATGGCCATAGTGTGATTTCACATAAGGGAATGATATATTGTCTTGGAGGAAAGAC AGATGACAAAAAGTGTACAAACAGGGTGTTTATCTACAACCCCAAAAAAGGAGATTGGAA AGATCTAGCTCCAATGAAAACCCCTCGTTCCATGTTTGGAGTAGCGGTCCATAAAGGCAA AATTGTGATTGCTGGGGGTGTCACCGAAGATGGTCTTTCAGCTTCAGTTGAGGCTTTTGA CCTTACCACCAACAAGTGGGAAGTAATGACTGAATTTCCCCAAGAAAGAAGCTCCATCAG TCT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 95-214, + strand, RNAz p=0.597271 | |
| 439-557, + strand, RNAz p=0.615675 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 95-214, + strand, RNAz p=0.597271 | |
| 439-557, + strand, RNAz p=0.615675 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 95-260, gnl|bosTau2|chr2 (20319636-20319471) | |
| 95-260, gnl|Hg17|chr2 (170196584-170196747) | |
| 95-260, gnl|Mm7|chr2 (69604900-69605063) | |
| 366-557, gnl|bosTau2|chr2 (20316291-20316100) | |
| 366-557, gnl|canFam2|chr36 (17260153-17260365) | |
| 366-557, gnl|danRer3|chrUn (114240076-114239863) | |
| 366-557, gnl|dasNov1|scaffold_9616 (9997-9790) | |
| 366-557, gnl|echTel1|scaffold_323457 (57122-56910) | |
| 366-557, gnl|fr1|chrUn (7128601-7128797) | |
| 366-557, gnl|galGal2|chr7 (19452093-19451886) | |
| 366-557, gnl|hg17|chr2 (170200192-170200399) | |
| 366-557, gnl|Hg17|chr2 (170200203-170200394) | |
| 366-557, gnl|loxAfr1|scaffold_8278 (65342-65552) | |
| 366-557, gnl|mm7|chr2 (69608609-69608821) | |
| 366-557, gnl|Mm7|chr2 (69608625-69608816) | |
| 366-557, gnl|monDom2|scaffold_2 (67740784-67740991) | |
| 366-557, gnl|oryCun1|scaffold_174964 (3797-3586) | |
| 366-557, gnl|panTro1|chr13 (59654665-59654872) | |
| 366-557, gnl|rheMac2|chr12 (33133693-33133900) | |
| 366-557, gnl|rn3|chr3 (51719634-51719846) | |
| 366-557, gnl|tetNig1|chr2 (11603161-11602948) | |
| 366-557, gnl|xenTro1|scaffold_65 (2698330-2698125) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-260, gnl|bosTau2|chr2 (20319636-20319471) | |
| 95-260, gnl|Hg17|chr2 (170196584-170196747) | |
| 95-260, gnl|Mm7|chr2 (69604900-69605063) | |
| 366-557, gnl|bosTau2|chr2 (20316291-20316100) | |
| 366-557, gnl|canFam2|chr36 (17260153-17260365) | |
| 366-557, gnl|danRer3|chrUn (114240076-114239863) | |
| 366-557, gnl|dasNov1|scaffold_9616 (9997-9790) | |
| 366-557, gnl|echTel1|scaffold_323457 (57122-56910) | |
| 366-557, gnl|fr1|chrUn (7128601-7128797) | |
| 366-557, gnl|galGal2|chr7 (19452093-19451886) | |
| 366-557, gnl|hg17|chr2 (170200192-170200399) | |
| 366-557, gnl|Hg17|chr2 (170200203-170200394) | |
| 366-557, gnl|loxAfr1|scaffold_8278 (65342-65552) | |
| 366-557, gnl|mm7|chr2 (69608609-69608821) | |
| 366-557, gnl|Mm7|chr2 (69608625-69608816) | |
| 366-557, gnl|monDom2|scaffold_2 (67740784-67740991) | |
| 366-557, gnl|oryCun1|scaffold_174964 (3797-3586) | |
| 366-557, gnl|panTro1|chr13 (59654665-59654872) | |
| 366-557, gnl|rheMac2|chr12 (33133693-33133900) | |
| 366-557, gnl|rn3|chr3 (51719634-51719846) | |
| 366-557, gnl|tetNig1|chr2 (11603161-11602948) | |
| 366-557, gnl|xenTro1|scaffold_65 (2698330-2698125) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) |