Non-Coding RNA Search

rptbr0127_k3.y1

Sequence:


               
               GAATATCTTTATAGTTATGATCACTTGTGTTTTATCAGCCATTGACTACAGCTCCTTGGG
AAATGCCAGATGGTTGTGCTTCAGAACACGTCTTTTCCATGTTTAATTGACGCCTGTGGA
GTCATCCCTGAAATGATACACAGGCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATATCTTTATAGTTATGATCACTTGTGTTTTATCAGCCATTGACTACAGCTCCTTGGG
AAATGCCAGATGGTTGTGCTTCAGAACACGTCTTTTCCATGTTTAATTGACGCCTGTGGA
GTCATCCCTGAAATGATACACAGGCCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               30-149, - strand, RNAz p=0.855177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-149, - strand, RNAz p=0.855177

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-149, gnl|bosTau2|chr1 (33280269-33280416)
               

               
               2-149, gnl|canFam2|chr33 (19386296-19386507)
               

               
               2-149, gnl|dasNov1|scaffold_195360 (3709-3924)
               

               
               2-149, gnl|hg17|chr3 (112878000-112878211)
               

               
               2-149, gnl|Hg17|chr3 (112878119-112878266)
               

               
               2-149, gnl|loxAfr1|scaffold_5358 (40323-40529)
               

               
               2-149, gnl|mm7|chr16 (45787596-45787342)
               

               
               2-149, gnl|Mm7|chr16 (45787433-45787286)
               

               
               2-149, gnl|monDom2|scaffold_24 (5532392-5532620)
               

               
               2-149, gnl|oryCun1|scaffold_213529 (4795-5006)
               

               
               2-149, gnl|panTro1|chr2 (114467201-114467412)
               

               
               2-149, gnl|rheMac2|chr2 (31783594-31783805)
               

               
               2-149, gnl|rn3|chr11 (56342196-56342418)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-149, gnl|bosTau2|chr1 (33280269-33280416)
               

               
               2-149, gnl|canFam2|chr33 (19386296-19386507)
               

               
               2-149, gnl|dasNov1|scaffold_195360 (3709-3924)
               

               
               2-149, gnl|hg17|chr3 (112878000-112878211)
               

               
               2-149, gnl|Hg17|chr3 (112878119-112878266)
               

               
               2-149, gnl|loxAfr1|scaffold_5358 (40323-40529)
               

               
               2-149, gnl|mm7|chr16 (45787596-45787342)
               

               
               2-149, gnl|Mm7|chr16 (45787433-45787286)
               

               
               2-149, gnl|monDom2|scaffold_24 (5532392-5532620)
               

               
               2-149, gnl|oryCun1|scaffold_213529 (4795-5006)
               

               
               2-149, gnl|panTro1|chr2 (114467201-114467412)
               

               
               2-149, gnl|rheMac2|chr2 (31783594-31783805)
               

               
               2-149, gnl|rn3|chr11 (56342196-56342418)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	2-149, gnl\|bosTau2\|chr1 (33280269-33280416)
	2-149, gnl\|canFam2\|chr33 (19386296-19386507)
	2-149, gnl\|dasNov1\|scaffold_195360 (3709-3924)
	2-149, gnl\|hg17\|chr3 (112878000-112878211)
	2-149, gnl\|Hg17\|chr3 (112878119-112878266)
	2-149, gnl\|loxAfr1\|scaffold_5358 (40323-40529)
	2-149, gnl\|mm7\|chr16 (45787596-45787342)
	2-149, gnl\|Mm7\|chr16 (45787433-45787286)
	2-149, gnl\|monDom2\|scaffold_24 (5532392-5532620)
	2-149, gnl\|oryCun1\|scaffold_213529 (4795-5006)
	2-149, gnl\|panTro1\|chr2 (114467201-114467412)
	2-149, gnl\|rheMac2\|chr2 (31783594-31783805)
	2-149, gnl\|rn3\|chr11 (56342196-56342418)