Non-Coding RNA Search

rptbr0131_d1.y1

Sequence:


               
               GACCAAAAAACCCTACATTTTAAACCAAGCAGGCATGATAATTGTTCAACAATTTTTTAA
AAGGCAGTACTTATTTAACACTCATTAAGCTTCACTCAATGGAGCCTTCAATATTTTGAC
TCCTTCCATCTCCAACTTTTTAAAAAAACATATAATTTTCCCTATACAGTAGAGTCTTTG
TGAAGAAGATATTTTCCTTCATTAACTTTTGTTACAGTTACTAAAGGATTAGTATCAGGC
CTCTTCAACACCAGGAGTTTCCAAATTTTAGCAAATATTCCTTCTGATAATCTTAACTAA
AATGTCATATTGCTTCATGAAATTATCACCATGAGGTCATTGAGGAAACTCAGCCCTACT
TAAAATCTGAGACAAAAATAGGTGCTGATTTGTGGTTTCCCCAAATCCACTGTAGTCACC
ATTTTACCTTCTATTAAAAGAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCAAAAAACCCTACATTTTAAACCAAGCAGGCATGATAATTGTTCAACAATTTTTTAA
AAGGCAGTACTTATTTAACACTCATTAAGCTTCACTCAATGGAGCCTTCAATATTTTGAC
TCCTTCCATCTCCAACTTTTTAAAAAAACATATAATTTTCCCTATACAGTAGAGTCTTTG
TGAAGAAGATATTTTCCTTCATTAACTTTTGTTACAGTTACTAAAGGATTAGTATCAGGC
CTCTTCAACACCAGGAGTTTCCAAATTTTAGCAAATATTCCTTCTGATAATCTTAACTAA
AATGTCATATTGCTTCATGAAATTATCACCATGAGGTCATTGAGGAAACTCAGCCCTACT
TAAAATCTGAGACAAAAATAGGTGCTGATTTGTGGTTTCCCCAAATCCACTGTAGTCACC
ATTTTACCTTCTATTAAAAGAAGCT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               5-428, gnl|bosTau2|chr2 (43801656-43801238)
               

               
               5-428, gnl|canFam2|chr19 (33102221-33101386)
               

               
               5-428, gnl|dasNov1|scaffold_46607 (6080-6859)
               

               
               5-428, gnl|echTel1|scaffold_292443 (3142-2232)
               

               
               5-428, gnl|hg17|chr2 (120456452-120457318)
               

               
               5-428, gnl|Hg17|chr2 (120456734-120457179)
               

               
               5-428, gnl|loxAfr1|scaffold_10405 (54510-55376)
               

               
               5-428, gnl|mm7|chr1 (119515142-119514370)
               

               
               5-428, gnl|Mm7|chr1 (119514868-119514468)
               

               
               5-428, gnl|monDom2|scaffold_2 (9464041-9462945)
               

               
               5-428, gnl|panTro1|chr13 (6475163-6476030)
               

               
               5-428, gnl|rheMac2|chr13 (126180947-126181804)
               

               
               5-428, gnl|rn3|chr13 (32435819-32435078)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-428, gnl|bosTau2|chr2 (43801656-43801238)
               

               
               5-428, gnl|canFam2|chr19 (33102221-33101386)
               

               
               5-428, gnl|dasNov1|scaffold_46607 (6080-6859)
               

               
               5-428, gnl|echTel1|scaffold_292443 (3142-2232)
               

               
               5-428, gnl|hg17|chr2 (120456452-120457318)
               

               
               5-428, gnl|Hg17|chr2 (120456734-120457179)
               

               
               5-428, gnl|loxAfr1|scaffold_10405 (54510-55376)
               

               
               5-428, gnl|mm7|chr1 (119515142-119514370)
               

               
               5-428, gnl|Mm7|chr1 (119514868-119514468)
               

               
               5-428, gnl|monDom2|scaffold_2 (9464041-9462945)
               

               
               5-428, gnl|panTro1|chr13 (6475163-6476030)
               

               
               5-428, gnl|rheMac2|chr13 (126180947-126181804)
               

               
               5-428, gnl|rn3|chr13 (32435819-32435078)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	5-428, gnl\|bosTau2\|chr2 (43801656-43801238)
	5-428, gnl\|canFam2\|chr19 (33102221-33101386)
	5-428, gnl\|dasNov1\|scaffold_46607 (6080-6859)
	5-428, gnl\|echTel1\|scaffold_292443 (3142-2232)
	5-428, gnl\|hg17\|chr2 (120456452-120457318)
	5-428, gnl\|Hg17\|chr2 (120456734-120457179)
	5-428, gnl\|loxAfr1\|scaffold_10405 (54510-55376)
	5-428, gnl\|mm7\|chr1 (119515142-119514370)
	5-428, gnl\|Mm7\|chr1 (119514868-119514468)
	5-428, gnl\|monDom2\|scaffold_2 (9464041-9462945)
	5-428, gnl\|panTro1\|chr13 (6475163-6476030)
	5-428, gnl\|rheMac2\|chr13 (126180947-126181804)
	5-428, gnl\|rn3\|chr13 (32435819-32435078)