Non-Coding RNA Search

rpty611b_h14.y1

Sequence:


               
               ACGAAAAAGCTTGAAGAGTTAAGAACTGTGAAGCCGGGAGTTGCTGGTGAAACCGCAAGG
CTGGGAGCTGCAACCGCTTTGTAATTGGCCAAAACTCCGCTGGGAGTGTACCTCCCTTGG
TGATTGGTGAAGAGAATGGGGCTTCCGAGGACAGTCTGACCAGTCAGGACGTCTCCTCCC
TGGCCAAGGAATCAGCATGTCTGAGACAGCTGAGCACATCTTCCTGTCAGTACCCTTCTA
CCTTCTCTAATTATTTCTTGACAATTTGAATACAGTTTTCACATTTAGTCTTCTTATCAA
AAGTAATATAGTTACTCTAATATTTATTTTTAAATGCTTTGGCCATCATTCTATACAATT
TCATGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAAAAAGCTTGAAGAGTTAAGAACTGTGAAGCCGGGAGTTGCTGGTGAAACCGCAAGG
CTGGGAGCTGCAACCGCTTTGTAATTGGCCAAAACTCCGCTGGGAGTGTACCTCCCTTGG
TGATTGGTGAAGAGAATGGGGCTTCCGAGGACAGTCTGACCAGTCAGGACGTCTCCTCCC
TGGCCAAGGAATCAGCATGTCTGAGACAGCTGAGCACATCTTCCTGTCAGTACCCTTCTA
CCTTCTCTAATTATTTCTTGACAATTTGAATACAGTTTTCACATTTAGTCTTCTTATCAA
AAGTAATATAGTTACTCTAATATTTATTTTTAAATGCTTTGGCCATCATTCTATACAATT
TCATGAATC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               3-189, gnl|bosTau2|chr1 (30387975-30388161)
               

               
               3-189, gnl|canFam2|chr33 (26701179-26701524)
               

               
               3-189, gnl|dasNov1|scaffold_13417 (22125-21792)
               

               
               3-189, gnl|echTel1|scaffold_295458 (66890-67235)
               

               
               3-189, gnl|hg17|chr3 (121296388-121296730)
               

               
               3-189, gnl|Hg17|chr3 (121296392-121296580)
               

               
               3-189, gnl|mm7|chr16 (37795917-37795561)
               

               
               3-189, gnl|Mm7|chr16 (37795911-37795723)
               

               
               3-189, gnl|monDom2|scaffold_24 (16806908-16807260)
               

               
               3-189, gnl|panTro1|chr2 (123019634-123019976)
               

               
               3-189, gnl|rheMac2|chr2 (40128485-40128826)
               

               
               3-189, gnl|rn3|chr11 (64487560-64487916)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-189, gnl|bosTau2|chr1 (30387975-30388161)
               

               
               3-189, gnl|canFam2|chr33 (26701179-26701524)
               

               
               3-189, gnl|dasNov1|scaffold_13417 (22125-21792)
               

               
               3-189, gnl|echTel1|scaffold_295458 (66890-67235)
               

               
               3-189, gnl|hg17|chr3 (121296388-121296730)
               

               
               3-189, gnl|Hg17|chr3 (121296392-121296580)
               

               
               3-189, gnl|mm7|chr16 (37795917-37795561)
               

               
               3-189, gnl|Mm7|chr16 (37795911-37795723)
               

               
               3-189, gnl|monDom2|scaffold_24 (16806908-16807260)
               

               
               3-189, gnl|panTro1|chr2 (123019634-123019976)
               

               
               3-189, gnl|rheMac2|chr2 (40128485-40128826)
               

               
               3-189, gnl|rn3|chr11 (64487560-64487916)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	3-189, gnl\|bosTau2\|chr1 (30387975-30388161)
	3-189, gnl\|canFam2\|chr33 (26701179-26701524)
	3-189, gnl\|dasNov1\|scaffold_13417 (22125-21792)
	3-189, gnl\|echTel1\|scaffold_295458 (66890-67235)
	3-189, gnl\|hg17\|chr3 (121296388-121296730)
	3-189, gnl\|Hg17\|chr3 (121296392-121296580)
	3-189, gnl\|mm7\|chr16 (37795917-37795561)
	3-189, gnl\|Mm7\|chr16 (37795911-37795723)
	3-189, gnl\|monDom2\|scaffold_24 (16806908-16807260)
	3-189, gnl\|panTro1\|chr2 (123019634-123019976)
	3-189, gnl\|rheMac2\|chr2 (40128485-40128826)
	3-189, gnl\|rn3\|chr11 (64487560-64487916)