Non-Coding RNA Search

rpty622b_c2.y1

Sequence:


               
               CCCCGGACCCAGCTGCCCGGGCTCCCGACTCGGAAGCTGCGCCCGCTGCTCCGACCCCGA
CCCCGGCCTCAGGCCCCCCTGCCGCAGCCGCCAGCCCTGGGACCCCTGGGGACGAGCTGT
ACGCGGCGCTGGAGTGACTATCACCCGGCCGAGCTGTACCGCGCGCTCGCCGTGTCCGGG
GGCACCCTGCCCCGCCGAAAGGGCTCCGGATTCCGCTGGAAGAGTCTCAGCCAGAGTCCT
GAACAGCAGCGGAAGGTTCTGACTCTGGAGAAGGAGGAGAACCAGACCTTTGGCTTTGAG
ATCCAGACTTACGGCCTCCACCACCGCGAGGAGCAGCGTGTGGAGATGGTGACCTTTGTC
TGCCGGGTTCATGAGTCCAGTCCTGCCCAGCTGGCTGGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGGACCCAGCTGCCCGGGCTCCCGACTCGGAAGCTGCGCCCGCTGCTCCGACCCCGA
CCCCGGCCTCAGGCCCCCCTGCCGCAGCCGCCAGCCCTGGGACCCCTGGGGACGAGCTGT
ACGCGGCGCTGGAGTGACTATCACCCGGCCGAGCTGTACCGCGCGCTCGCCGTGTCCGGG
GGCACCCTGCCCCGCCGAAAGGGCTCCGGATTCCGCTGGAAGAGTCTCAGCCAGAGTCCT
GAACAGCAGCGGAAGGTTCTGACTCTGGAGAAGGAGGAGAACCAGACCTTTGGCTTTGAG
ATCCAGACTTACGGCCTCCACCACCGCGAGGAGCAGCGTGTGGAGATGGTGACCTTTGTC
TGCCGGGTTCATGAGTCCAGTCCTGCCCAGCTGGCTGGGCTC

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-202, gnl|bosTau2|chr5 (19451803-19452003)
               

               
               1-202, gnl|echTel1|scaffold_255342 (1107-1347)
               

               
               1-202, gnl|galGal2|chr1 (99688353-99688106)
               

               
               1-202, gnl|hg17|chr12 (50687118-50687356)
               

               
               1-202, gnl|Hg17|chr12 (50687123-50687317)
               

               
               1-202, gnl|loxAfr1|scaffold_24639 (5117-4875)
               

               
               1-202, gnl|mm7|chr15 (101210194-101210434)
               

               
               1-202, gnl|Mm7|chr15 (101210199-101210390)
               

               
               1-202, gnl|monDom2|scaffold_71 (929507-929716)
               

               
               1-202, gnl|panTro1|chr10 (51904837-51905075)
               

               
               1-202, gnl|rn3|chr7 (140046717-140046957)
               

               
               1-202, gnl|xenTro1|scaffold_6 (4742260-4742046)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-202, gnl|bosTau2|chr5 (19451803-19452003)
               

               
               1-202, gnl|echTel1|scaffold_255342 (1107-1347)
               

               
               1-202, gnl|galGal2|chr1 (99688353-99688106)
               

               
               1-202, gnl|hg17|chr12 (50687118-50687356)
               

               
               1-202, gnl|Hg17|chr12 (50687123-50687317)
               

               
               1-202, gnl|loxAfr1|scaffold_24639 (5117-4875)
               

               
               1-202, gnl|mm7|chr15 (101210194-101210434)
               

               
               1-202, gnl|Mm7|chr15 (101210199-101210390)
               

               
               1-202, gnl|monDom2|scaffold_71 (929507-929716)
               

               
               1-202, gnl|panTro1|chr10 (51904837-51905075)
               

               
               1-202, gnl|rn3|chr7 (140046717-140046957)
               

               
               1-202, gnl|xenTro1|scaffold_6 (4742260-4742046)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	1-202, gnl\|bosTau2\|chr5 (19451803-19452003)
	1-202, gnl\|echTel1\|scaffold_255342 (1107-1347)
	1-202, gnl\|galGal2\|chr1 (99688353-99688106)
	1-202, gnl\|hg17\|chr12 (50687118-50687356)
	1-202, gnl\|Hg17\|chr12 (50687123-50687317)
	1-202, gnl\|loxAfr1\|scaffold_24639 (5117-4875)
	1-202, gnl\|mm7\|chr15 (101210194-101210434)
	1-202, gnl\|Mm7\|chr15 (101210199-101210390)
	1-202, gnl\|monDom2\|scaffold_71 (929507-929716)
	1-202, gnl\|panTro1\|chr10 (51904837-51905075)
	1-202, gnl\|rn3\|chr7 (140046717-140046957)
	1-202, gnl\|xenTro1\|scaffold_6 (4742260-4742046)