Non-Coding RNA Search

rpty622b_m16.y1

Sequence:


               
               GCGCGCCGCCCTGGCCAAGGCGCTCAAAATGACCGACGCGCAGGTCAAAACCTGGTTCCA
GAATCGGCGGACTAAGTGGAGGCGGCAGACTGCAGAGGAGCGTGAAGCCGAGAGGCAGCA
GGCGAACCGCATCCTCCTGCAGCTGCAGCAAGAAGCCTTCCAGAAGAGCCTGGCGCAGCC
GCTGCCTGCCGACCCGCTTTGCGTGCACAACTCATCGCTCTTCGCCCTGCAGAACCTGCA
GCCCTGGTCTGACGACTCGACCAAGATCACCAGCGTCACGTCCGTGGCGTCGGCCTGTGA
GTGACCCGGGCCCATCCAAGGGGTCGCCGAGGCCGAGGCCTGAGAGCCTGGACTCTCGCC
CACTCTCCCGCCGCAGACTGCACACAGCAGGGGAACGCCCGCTCCTCCAAACCTGGCGGT
AGCGCTCAGGCTGGCGGCCAGCCGTTCTCTTTTCCACAGAAAAGAAGAGCGCCCAGGAAA
AGGATGCACGGCCGCCTCCCAGATGCCTATGCGGAACTGTTCAGAGTCTTCTGTTTGCGT
CTATTTTATTTTATTCTGATTTTCAACGTGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGCCGCCCTGGCCAAGGCGCTCAAAATGACCGACGCGCAGGTCAAAACCTGGTTCCA
GAATCGGCGGACTAAGTGGAGGCGGCAGACTGCAGAGGAGCGTGAAGCCGAGAGGCAGCA
GGCGAACCGCATCCTCCTGCAGCTGCAGCAAGAAGCCTTCCAGAAGAGCCTGGCGCAGCC
GCTGCCTGCCGACCCGCTTTGCGTGCACAACTCATCGCTCTTCGCCCTGCAGAACCTGCA
GCCCTGGTCTGACGACTCGACCAAGATCACCAGCGTCACGTCCGTGGCGTCGGCCTGTGA
GTGACCCGGGCCCATCCAAGGGGTCGCCGAGGCCGAGGCCTGAGAGCCTGGACTCTCGCC
CACTCTCCCGCCGCAGACTGCACACAGCAGGGGAACGCCCGCTCCTCCAAACCTGGCGGT
AGCGCTCAGGCTGGCGGCCAGCCGTTCTCTTTTCCACAGAAAAGAAGAGCGCCCAGGAAA
AGGATGCACGGCCGCCTCCCAGATGCCTATGCGGAACTGTTCAGAGTCTTCTGTTTGCGT
CTATTTTATTTTATTCTGATTTTCAACGTGGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-234, - strand, RNAz p=0.936394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-234, - strand, RNAz p=0.936394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-572, gnl|bosTau2|chr26 (13529240-13529771)
               

               
               76-572, gnl|Hg17|chr10 (102886432-102886948)
               

               
               76-572, gnl|Mm7|chr19 (45049726-45050226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-572, gnl|bosTau2|chr26 (13529240-13529771)
               

               
               76-572, gnl|Hg17|chr10 (102886432-102886948)
               

               
               76-572, gnl|Mm7|chr19 (45049726-45050226)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	76-572, gnl\|bosTau2\|chr26 (13529240-13529771)
	76-572, gnl\|Hg17\|chr10 (102886432-102886948)
	76-572, gnl\|Mm7\|chr19 (45049726-45050226)