Non-Coding RNA Search

rpty626b_m1.y1

Sequence:


               
               TGTTCCCAAAGTGTGGACCCCAGACTTGCAGCTTTGGTATCACAGGGAAACACATTGAAA
CGCAAATTACTCAGCCCTACTTcagacctacggagtcagaatctctggggataagaccca
ggagtctgtgttttaacaattctccaggtgattctTAGGCATGCCAAGTTTTGAAAAGCA
TACATCTAGAGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCCCAAAGTGTGGACCCCAGACTTGCAGCTTTGGTATCACAGGGAAACACATTGAAA
CGCAAATTACTCAGCCCTACTTcagacctacggagtcagaatctctggggataagaccca
ggagtctgtgttttaacaattctccaggtgattctTAGGCATGCCAAGTTTTGAAAAGCA
TACATCTAGAGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-194, + strand, RNAz p=0.990517

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-194, + strand, RNAz p=0.990517

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-194, gnl|bosTau2|chr15 (30743024-30743215)
               

               
               3-194, gnl|dasNov1|scaffold_212450 (1555-1690)
               

               
               3-194, gnl|echTel1|scaffold_283453 (18272-18113)
               

               
               3-194, gnl|hg17|chr2 (43887256-43887403)
               

               
               3-194, gnl|Hg17|chr2 (43887260-43887449)
               

               
               3-194, gnl|loxAfr1|scaffold_3557 (21318-21168)
               

               
               3-194, gnl|panTro1|chr12_random (18396664-18396517)
               

               
               3-194, gnl|rheMac2|chr13 (43850761-43850908)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-194, gnl|bosTau2|chr15 (30743024-30743215)
               

               
               3-194, gnl|dasNov1|scaffold_212450 (1555-1690)
               

               
               3-194, gnl|echTel1|scaffold_283453 (18272-18113)
               

               
               3-194, gnl|hg17|chr2 (43887256-43887403)
               

               
               3-194, gnl|Hg17|chr2 (43887260-43887449)
               

               
               3-194, gnl|loxAfr1|scaffold_3557 (21318-21168)
               

               
               3-194, gnl|panTro1|chr12_random (18396664-18396517)
               

               
               3-194, gnl|rheMac2|chr13 (43850761-43850908)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	3-194, gnl\|bosTau2\|chr15 (30743024-30743215)
	3-194, gnl\|dasNov1\|scaffold_212450 (1555-1690)
	3-194, gnl\|echTel1\|scaffold_283453 (18272-18113)
	3-194, gnl\|hg17\|chr2 (43887256-43887403)
	3-194, gnl\|Hg17\|chr2 (43887260-43887449)
	3-194, gnl\|loxAfr1\|scaffold_3557 (21318-21168)
	3-194, gnl\|panTro1\|chr12_random (18396664-18396517)
	3-194, gnl\|rheMac2\|chr13 (43850761-43850908)