Non-Coding RNA Search

rpty631b_g6.y1

Sequence:


               
               GGAGCACGCCGTGTAAATTCTCGCAGTACAGGTGTAGCTGCCTGCTCGGGGACACGGCGA
AGCGCGTGTCTGACAAATGAAAGCCGGGCGGCCGCGCAGCCGACTGTCAGCTCTCGGCAG
CGGAGAGGAGCAGATCAAAGCCATCGGGGGACTTCGGAGCCCCCTGAGCGCCTCCGTGGC
TGCGGCTCCTAATGCCATTCGAGGGGAGCCGGGCCGAGCACAGCGTGGGGGACGAAGTGA
CTTTTCATTTCGCCCCAGTCCTGGGGTCCTCGGGCCGGCGCTGGCCTCCCTCGCGCCCTG
GGGTTGGTGGGTGCCCTGAGGACACCGGGACACTGCGTCAGGCTCGCACCCGGGACGCCC
GGCCCTGCGCGCGTGCCCGAAACCTAGCGCCGGAGAAAGGTCATGGTGACACTCCGAGGG
GTTCTGCAGTCTTTGAGCAGAACCCGGAGCAAACAGCCTCAACTGGCGGAACCCCCAGGA
TGGCAGAATCCCATCCTTACCCCCAGGTCGTGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCACGCCGTGTAAATTCTCGCAGTACAGGTGTAGCTGCCTGCTCGGGGACACGGCGA
AGCGCGTGTCTGACAAATGAAAGCCGGGCGGCCGCGCAGCCGACTGTCAGCTCTCGGCAG
CGGAGAGGAGCAGATCAAAGCCATCGGGGGACTTCGGAGCCCCCTGAGCGCCTCCGTGGC
TGCGGCTCCTAATGCCATTCGAGGGGAGCCGGGCCGAGCACAGCGTGGGGGACGAAGTGA
CTTTTCATTTCGCCCCAGTCCTGGGGTCCTCGGGCCGGCGCTGGCCTCCCTCGCGCCCTG
GGGTTGGTGGGTGCCCTGAGGACACCGGGACACTGCGTCAGGCTCGCACCCGGGACGCCC
GGCCCTGCGCGCGTGCCCGAAACCTAGCGCCGGAGAAAGGTCATGGTGACACTCCGAGGG
GTTCTGCAGTCTTTGAGCAGAACCCGGAGCAAACAGCCTCAACTGGCGGAACCCCCAGGA
TGGCAGAATCCCATCCTTACCCCCAGGTCGTGTCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               199-317, - strand, RNAz p=0.728313
               

               
               357-500, - strand, RNAz p=0.841023

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-317, - strand, RNAz p=0.728313
               

               
               357-500, - strand, RNAz p=0.841023

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-505, gnl|bosTau2|chr20 (41241113-41240620)
               

               
               1-505, gnl|Hg17|chr5 (3643868-3643370)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr20 (41241113-41240620)
               

               
               1-505, gnl|Hg17|chr5 (3643868-3643370)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	199-317, - strand, RNAz p=0.728313
	357-500, - strand, RNAz p=0.841023

	1-505, gnl\|bosTau2\|chr20 (41241113-41240620)
	1-505, gnl\|Hg17\|chr5 (3643868-3643370)