Non-Coding RNA Search

rpty637b_i18.y1

Sequence:


               
               CGGCTGAAGCACAGGAAGCTGCGGGAGCAGGTGAACTCCATGGTGGACATTTCCAAGATG
CACATGATCCTGTGTGACCTGCAGCTGGGTCTGAGCAGCTCACACCAGGCCCTGGAGAAG
CGGATTGATGCACTGGCAGGGAAGCTGGACACCCTGACCGAGCTGCTTGGCGCTGCCCTG
GGGCCACGGCAGCTTCTAGAACCGAGCCAAGAGGCCACGTAGCTGGACCTGTGGAGGAAG
AACCAAGCTACCTTCCCCAGGACTGAGGTCAAGGACACTCTCCCTGCTACTCCTGACCCA
GCCCCACGCACAAAGCACCTCAAGTGTGAGGACCGAGAAGGGCCGACCTGGAGATGGGTT
GACTCGCTGATGGCTGCTGGAGGGGACACTGGCTGAAGGAGGAGGCTGAGGTCCACCGGC
CACCAAGGCCCCAAGTAGGAAAATGGTCATCAGTACCCCCATACCCTGGACAAAAACATC
CTCACTCTGCTGCTAACGACGACCACTAGCTTTCAGGTAGACGTGGGAGTGCCTGGAGGC
TGGGACTGCTGGGTCCCAGAGGAGGAGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGAAGCACAGGAAGCTGCGGGAGCAGGTGAACTCCATGGTGGACATTTCCAAGATG
CACATGATCCTGTGTGACCTGCAGCTGGGTCTGAGCAGCTCACACCAGGCCCTGGAGAAG
CGGATTGATGCACTGGCAGGGAAGCTGGACACCCTGACCGAGCTGCTTGGCGCTGCCCTG
GGGCCACGGCAGCTTCTAGAACCGAGCCAAGAGGCCACGTAGCTGGACCTGTGGAGGAAG
AACCAAGCTACCTTCCCCAGGACTGAGGTCAAGGACACTCTCCCTGCTACTCCTGACCCA
GCCCCACGCACAAAGCACCTCAAGTGTGAGGACCGAGAAGGGCCGACCTGGAGATGGGTT
GACTCGCTGATGGCTGCTGGAGGGGACACTGGCTGAAGGAGGAGGCTGAGGTCCACCGGC
CACCAAGGCCCCAAGTAGGAAAATGGTCATCAGTACCCCCATACCCTGGACAAAAACATC
CTCACTCTGCTGCTAACGACGACCACTAGCTTTCAGGTAGACGTGGGAGTGCCTGGAGGC
TGGGACTGCTGGGTCCCAGAGGAGGAGAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26353874|dbj|BAC40567.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26353874|dbj|BAC40567.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               423-528, - strand, RNAz p=0.933384

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-528, - strand, RNAz p=0.933384

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002250, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002250, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               225-562, gnl|bosTau2|chr18 (46087975-46088313)
               

               
               225-562, gnl|canFam2|chr1 (114299906-114299315)
               

               
               225-562, gnl|dasNov1|scaffold_192673 (4444-3897)
               

               
               225-562, gnl|hg17|chr19 (48962446-48963004)
               

               
               225-562, gnl|Hg17|chr19 (48963082-48962736)
               

               
               225-562, gnl|mm7|chr7 (21172983-21172505)
               

               
               225-562, gnl|Mm7|chr7 (21172427-21172715)
               

               
               225-562, gnl|panTro1|chr20 (45899900-45900458)
               

               
               225-562, gnl|rheMac2|chr19 (50230909-50231457)
               

               
               225-562, gnl|rn3|chr1 (79707105-79706622)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-562, gnl|bosTau2|chr18 (46087975-46088313)
               

               
               225-562, gnl|canFam2|chr1 (114299906-114299315)
               

               
               225-562, gnl|dasNov1|scaffold_192673 (4444-3897)
               

               
               225-562, gnl|hg17|chr19 (48962446-48963004)
               

               
               225-562, gnl|Hg17|chr19 (48963082-48962736)
               

               
               225-562, gnl|mm7|chr7 (21172983-21172505)
               

               
               225-562, gnl|Mm7|chr7 (21172427-21172715)
               

               
               225-562, gnl|panTro1|chr20 (45899900-45900458)
               

               
               225-562, gnl|rheMac2|chr19 (50230909-50231457)
               

               
               225-562, gnl|rn3|chr1 (79707105-79706622)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	225-562, gnl\|bosTau2\|chr18 (46087975-46088313)
	225-562, gnl\|canFam2\|chr1 (114299906-114299315)
	225-562, gnl\|dasNov1\|scaffold_192673 (4444-3897)
	225-562, gnl\|hg17\|chr19 (48962446-48963004)
	225-562, gnl\|Hg17\|chr19 (48963082-48962736)
	225-562, gnl\|mm7\|chr7 (21172983-21172505)
	225-562, gnl\|Mm7\|chr7 (21172427-21172715)
	225-562, gnl\|panTro1\|chr20 (45899900-45900458)
	225-562, gnl\|rheMac2\|chr19 (50230909-50231457)
	225-562, gnl\|rn3\|chr1 (79707105-79706622)