Non-Coding RNA Search

rrec06_d2.y1

Sequence:


               
               AAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCC
GCCAGGGGAAAAGGGCATCCTTGCTAATTTCACATTCATATTAAAAAAAAGAAACGCAGG
GAAGGTGACAGTCACGCTGCTGAGGTGGCTTAACGAAAGGAGGGCAGCAAAAAAAAAAAA
AAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCC
GCCAGGGGAAAAGGGCATCCTTGCTAATTTCACATTCATATTAAAAAAAAGAAACGCAGG
GAAGGTGACAGTCACGCTGCTGAGGTGGCTTAACGAAAGGAGGGCAGCAAAAAAAAAAAA
AAAAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-177, gnl|bosTau2|chr11 (83210373-83210200)
               

               
               1-177, gnl|canFam2|chr9 (55018955-55018788)
               

               
               1-177, gnl|echTel1|scaffold_315347 (42345-42488)
               

               
               1-177, gnl|galGal2|chr17 (3744401-3744245)
               

               
               1-177, gnl|hg17|chr9 (132524760-132524899)
               

               
               1-177, gnl|Hg17|chr9 (132524937-132524760)
               

               
               1-177, gnl|loxAfr1|scaffold_7671 (16137-16274)
               

               
               1-177, gnl|mm7|chr2 (28892768-28892637)
               

               
               1-177, gnl|Mm7|chr2 (28892597-28892766)
               

               
               1-177, gnl|monDom2|scaffold_51 (8452150-8452279)
               

               
               1-177, gnl|oryCun1|scaffold_167486 (881-1015)
               

               
               1-177, gnl|panTro1|chr11 (117406628-117406766)
               

               
               1-177, gnl|rheMac2|chr15 (6022607-6022470)
               

               
               1-177, gnl|rn3|chr3 (7894314-7894183)
               

               
               1-177, gnl|xenTro1|scaffold_191 (1298917-1299048)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr11 (83210373-83210200)
               

               
               1-177, gnl|canFam2|chr9 (55018955-55018788)
               

               
               1-177, gnl|echTel1|scaffold_315347 (42345-42488)
               

               
               1-177, gnl|galGal2|chr17 (3744401-3744245)
               

               
               1-177, gnl|hg17|chr9 (132524760-132524899)
               

               
               1-177, gnl|Hg17|chr9 (132524937-132524760)
               

               
               1-177, gnl|loxAfr1|scaffold_7671 (16137-16274)
               

               
               1-177, gnl|mm7|chr2 (28892768-28892637)
               

               
               1-177, gnl|Mm7|chr2 (28892597-28892766)
               

               
               1-177, gnl|monDom2|scaffold_51 (8452150-8452279)
               

               
               1-177, gnl|oryCun1|scaffold_167486 (881-1015)
               

               
               1-177, gnl|panTro1|chr11 (117406628-117406766)
               

               
               1-177, gnl|rheMac2|chr15 (6022607-6022470)
               

               
               1-177, gnl|rn3|chr3 (7894314-7894183)
               

               
               1-177, gnl|xenTro1|scaffold_191 (1298917-1299048)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               rec (0.17307)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	1-177, gnl\|bosTau2\|chr11 (83210373-83210200)
	1-177, gnl\|canFam2\|chr9 (55018955-55018788)
	1-177, gnl\|echTel1\|scaffold_315347 (42345-42488)
	1-177, gnl\|galGal2\|chr17 (3744401-3744245)
	1-177, gnl\|hg17\|chr9 (132524760-132524899)
	1-177, gnl\|Hg17\|chr9 (132524937-132524760)
	1-177, gnl\|loxAfr1\|scaffold_7671 (16137-16274)
	1-177, gnl\|mm7\|chr2 (28892768-28892637)
	1-177, gnl\|Mm7\|chr2 (28892597-28892766)
	1-177, gnl\|monDom2\|scaffold_51 (8452150-8452279)
	1-177, gnl\|oryCun1\|scaffold_167486 (881-1015)
	1-177, gnl\|panTro1\|chr11 (117406628-117406766)
	1-177, gnl\|rheMac2\|chr15 (6022607-6022470)
	1-177, gnl\|rn3\|chr3 (7894314-7894183)
	1-177, gnl\|xenTro1\|scaffold_191 (1298917-1299048)