Non-Coding RNA Search

rrec07_d8.y1

Sequence:


               
               ATCCATGCCTACTTTTTATTATTCCCTGTCAGTATTTCAGCTTTAATAACTGTACCATTT
AAGAGTATGAACAAAGTGAGGAAGAAAATTTAAACAGCTGTTTGCAGTACTTCTTATAGT
TACCTTCTTCCCTTCTGATTCGTTTCTTTCTTACATGCATTCAGAAAAGTATCTCAAAAT
GTTTTGTCTTGGAATGAAGATTTTCATATCTGGTGTTGACCTGTATGAATACAAATTACT
CTAAATGTGTTATCTTTGATTTTTTTTTTCTCATAATTTTTCAAATCCAGGATGGTACCT
TGTTTGATGGCCGACCAATAGAGTCTCTGTCACTGATAGATGCCGTGATGCCTGATGTAG
TACAAACAAGACAACAAGCTTATAGAGATAAACTTGCACAGCAACAAGCAGCAGCTGCTG
CAGCTGCCGCAGCTGCAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCATGCCTACTTTTTATTATTCCCTGTCAGTATTTCAGCTTTAATAACTGTACCATTT
AAGAGTATGAACAAAGTGAGGAAGAAAATTTAAACAGCTGTTTGCAGTACTTCTTATAGT
TACCTTCTTCCCTTCTGATTCGTTTCTTTCTTACATGCATTCAGAAAAGTATCTCAAAAT
GTTTTGTCTTGGAATGAAGATTTTCATATCTGGTGTTGACCTGTATGAATACAAATTACT
CTAAATGTGTTATCTTTGATTTTTTTTTTCTCATAATTTTTCAAATCCAGGATGGTACCT
TGTTTGATGGCCGACCAATAGAGTCTCTGTCACTGATAGATGCCGTGATGCCTGATGTAG
TACAAACAAGACAACAAGCTTATAGAGATAAACTTGCACAGCAACAAGCAGCAGCTGCTG
CAGCTGCCGCAGCTGCAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-441, - strand, RNAz p=0.994873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-441, - strand, RNAz p=0.994873

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               313-437, DB206776 TRACH2 Homo sapiens cDNA clone TRACH2019190 5', mRNA 
(dbj|DB206776.1|), blast E-value=0, identity=96.8% 
               

               
               313-437, DB212223 TRACH2 Homo sapiens cDNA clone TRACH2025877 5', mRNA 
(dbj|DB212223.1|), blast E-value=0, identity=96.8% 
               

               
               313-437, DKFZp459O0542_r1 459 (synonym (emb|CR543839.1|), blast E-value=0, 
identity=96.8% 
               

               
               313-441, 1398810 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN547319.1|), 
blast E-value=0, identity=96.9% 
               

               
               313-441, 1403210 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN740811.1|), 
blast E-value=0, identity=96.9% 
               

               
               313-441, 1459156 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT897003.1|), 
blast E-value=0, identity=96.9%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               313-437, DB206776 TRACH2 Homo sapiens cDNA clone TRACH2019190 5', mRNA 
(dbj|DB206776.1|), blast E-value=0, identity=96.8% 
               

               
               313-437, DB212223 TRACH2 Homo sapiens cDNA clone TRACH2025877 5', mRNA 
(dbj|DB212223.1|), blast E-value=0, identity=96.8% 
               

               
               313-437, DKFZp459O0542_r1 459 (synonym (emb|CR543839.1|), blast E-value=0, 
identity=96.8% 
               

               
               313-441, 1398810 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN547319.1|), 
blast E-value=0, identity=96.9% 
               

               
               313-441, 1403210 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN740811.1|), 
blast E-value=0, identity=96.9% 
               

               
               313-441, 1459156 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT897003.1|), 
blast E-value=0, identity=96.9%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-441, gnl|bosTau2|chr1 (58579812-58579377)
               

               
               2-441, gnl|Hg17|chr3 (178252498-178252066)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-441, gnl|bosTau2|chr1 (58579812-58579377)
               

               
               2-441, gnl|Hg17|chr3 (178252498-178252066)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	313-437, DB206776 TRACH2 Homo sapiens cDNA clone TRACH2019190 5', mRNA (dbj\|DB206776.1\|), blast E-value=0, identity=96.8%
	313-437, DB212223 TRACH2 Homo sapiens cDNA clone TRACH2025877 5', mRNA (dbj\|DB212223.1\|), blast E-value=0, identity=96.8%
	313-437, DKFZp459O0542_r1 459 (synonym (emb\|CR543839.1\|), blast E-value=0, identity=96.8%
	313-441, 1398810 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN547319.1\|), blast E-value=0, identity=96.9%
	313-441, 1403210 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN740811.1\|), blast E-value=0, identity=96.9%
	313-441, 1459156 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT897003.1\|), blast E-value=0, identity=96.9%

	2-441, gnl\|bosTau2\|chr1 (58579812-58579377)
	2-441, gnl\|Hg17\|chr3 (178252498-178252066)