Non-Coding RNA Search

rrec07_j16.y1

Sequence:


               
               TGATACTGGAAACTGATTTTTTTTTTTTCCTGTAACTTGAGGATACTTTTAAAATGTAAG
ACAAGACAAATGTCCTAAATTACACCGTGATGAAATGTTAATGCCTATGAAATTGTTAAT
ATTTGCTGGACTTGATTAGTGCATGTAAATGAAACTCTGAAGAACTATGTTAAGTTAGAA
CCCTTACTGATGCAGCCCTGTGTCTTTTCTGGAAAGAAGTGAGAGCAGTTGTTGATGTAG
TAGCCCGATGTTTCCTGATCAGATGGCAACTTGACTTGTGATTTAAGGTAAATTTGAATT
TGATCTGCTCATTGTGTATTGATCTCTGTCACCTTTTTCTTTTGACTTTAAAAAATATTT
ATATCCCTAAACAAATTGCTCTCATATATATGATATATAATATATATATTACATATATAT
AGAAGATGCCTAATTTGAAATACTCTGGTGAATTTTTAAACAAAAAATTAAAATTTTTGT
GGAAATATTTTTACAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATACTGGAAACTGATTTTTTTTTTTTCCTGTAACTTGAGGATACTTTTAAAATGTAAG
ACAAGACAAATGTCCTAAATTACACCGTGATGAAATGTTAATGCCTATGAAATTGTTAAT
ATTTGCTGGACTTGATTAGTGCATGTAAATGAAACTCTGAAGAACTATGTTAAGTTAGAA
CCCTTACTGATGCAGCCCTGTGTCTTTTCTGGAAAGAAGTGAGAGCAGTTGTTGATGTAG
TAGCCCGATGTTTCCTGATCAGATGGCAACTTGACTTGTGATTTAAGGTAAATTTGAATT
TGATCTGCTCATTGTGTATTGATCTCTGTCACCTTTTTCTTTTGACTTTAAAAAATATTT
ATATCCCTAAACAAATTGCTCTCATATATATGATATATAATATATATATTACATATATAT
AGAAGATGCCTAATTTGAAATACTCTGGTGAATTTTTAAACAAAAAATTAAAATTTTTGT
GGAAATATTTTTACAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               3-495, gnl|bosTau2|chr13 (16690419-16690899)
               

               
               3-495, gnl|canFam2|chr2 (20396057-20395382)
               

               
               3-495, gnl|dasNov1|scaffold_3430 (88120-88715)
               

               
               3-495, gnl|echTel1|scaffold_317385 (124452-123786)
               

               
               3-495, gnl|hg17|chr10 (28950163-28950792)
               

               
               3-495, gnl|loxAfr1|scaffold_2791 (4605-3946)
               

               
               3-495, gnl|mm7|chr18 (8131413-8131990)
               

               
               3-495, gnl|monDom2|scaffold_7 (39822829-39822080)
               

               
               3-495, gnl|oryCun1|scaffold_200449 (4001-3471)
               

               
               3-495, gnl|panTro1|chr8 (29296801-29297438)
               

               
               3-495, gnl|rheMac2|chr9 (28714701-28715327)
               

               
               3-495, gnl|rn3|chr17 (64602778-64603330)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-495, gnl|bosTau2|chr13 (16690419-16690899)
               

               
               3-495, gnl|canFam2|chr2 (20396057-20395382)
               

               
               3-495, gnl|dasNov1|scaffold_3430 (88120-88715)
               

               
               3-495, gnl|echTel1|scaffold_317385 (124452-123786)
               

               
               3-495, gnl|hg17|chr10 (28950163-28950792)
               

               
               3-495, gnl|loxAfr1|scaffold_2791 (4605-3946)
               

               
               3-495, gnl|mm7|chr18 (8131413-8131990)
               

               
               3-495, gnl|monDom2|scaffold_7 (39822829-39822080)
               

               
               3-495, gnl|oryCun1|scaffold_200449 (4001-3471)
               

               
               3-495, gnl|panTro1|chr8 (29296801-29297438)
               

               
               3-495, gnl|rheMac2|chr9 (28714701-28715327)
               

               
               3-495, gnl|rn3|chr17 (64602778-64603330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	3-495, gnl\|bosTau2\|chr13 (16690419-16690899)
	3-495, gnl\|canFam2\|chr2 (20396057-20395382)
	3-495, gnl\|dasNov1\|scaffold_3430 (88120-88715)
	3-495, gnl\|echTel1\|scaffold_317385 (124452-123786)
	3-495, gnl\|hg17\|chr10 (28950163-28950792)
	3-495, gnl\|loxAfr1\|scaffold_2791 (4605-3946)
	3-495, gnl\|mm7\|chr18 (8131413-8131990)
	3-495, gnl\|monDom2\|scaffold_7 (39822829-39822080)
	3-495, gnl\|oryCun1\|scaffold_200449 (4001-3471)
	3-495, gnl\|panTro1\|chr8 (29296801-29297438)
	3-495, gnl\|rheMac2\|chr9 (28714701-28715327)
	3-495, gnl\|rn3\|chr17 (64602778-64603330)