Non-Coding RNA Search

rrec23_i10.y1

Sequence:


               
               AGAAAAGATATAAGACTATACAGCTCTTGTTCTTAAAAGCAGCTTGTATTGGTCAAGGAC
TTGTGGATCAGGTGGAAGCATCAGTAGAGGAAGCCATCAGCTCTGGAACATGGGTTGATA
TTGCTCCTCTGCTACCCAGTTCCTTGTCAGTTGAAGATGCTGCAATACTGCTTCAACACC
TTTTGAGAGCACTCAGCAAACAGACTTCAGCTGTAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAGATATAAGACTATACAGCTCTTGTTCTTAAAAGCAGCTTGTATTGGTCAAGGAC
TTGTGGATCAGGTGGAAGCATCAGTAGAGGAAGCCATCAGCTCTGGAACATGGGTTGATA
TTGCTCCTCTGCTACCCAGTTCCTTGTCAGTTGAAGATGCTGCAATACTGCTTCAACACC
TTTTGAGAGCACTCAGCAAACAGACTTCAGCTGTAGTCT

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-124, gnl|bosTau2|chr9 (29320793-29320670)
               

               
               1-124, gnl|canFam2|chr12 (58009275-58009481)
               

               
               1-124, gnl|danRer3|chr20 (392833-393013)
               

               
               1-124, gnl|echTel1|scaffold_323896 (54067-53861)
               

               
               1-124, gnl|fr1|chrUn (280654370-280654177)
               

               
               1-124, gnl|galGal2|chr3 (71178351-71178140)
               

               
               1-124, gnl|hg17|chr6 (97091954-97092160)
               

               
               1-124, gnl|Hg17|chr6 (97092022-97092145)
               

               
               1-124, gnl|loxAfr1|scaffold_4124 (42806-42600)
               

               
               1-124, gnl|mm7|chr4 (25337685-25337479)
               

               
               1-124, gnl|Mm7|chr4 (25337615-25337492)
               

               
               1-124, gnl|monDom2|scaffold_0 (128643825-128643619)
               

               
               1-124, gnl|panTro1|chr5 (99054148-99054354)
               

               
               1-124, gnl|rheMac2|chr4 (92471293-92471499)
               

               
               1-124, gnl|rn3|chr5 (40325618-40325412)
               

               
               1-124, gnl|tetNig1|chrUn_random (115526190-115525996)
               

               
               1-124, gnl|xenTro1|scaffold_164 (824669-824875)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr9 (29320793-29320670)
               

               
               1-124, gnl|canFam2|chr12 (58009275-58009481)
               

               
               1-124, gnl|danRer3|chr20 (392833-393013)
               

               
               1-124, gnl|echTel1|scaffold_323896 (54067-53861)
               

               
               1-124, gnl|fr1|chrUn (280654370-280654177)
               

               
               1-124, gnl|galGal2|chr3 (71178351-71178140)
               

               
               1-124, gnl|hg17|chr6 (97091954-97092160)
               

               
               1-124, gnl|Hg17|chr6 (97092022-97092145)
               

               
               1-124, gnl|loxAfr1|scaffold_4124 (42806-42600)
               

               
               1-124, gnl|mm7|chr4 (25337685-25337479)
               

               
               1-124, gnl|Mm7|chr4 (25337615-25337492)
               

               
               1-124, gnl|monDom2|scaffold_0 (128643825-128643619)
               

               
               1-124, gnl|panTro1|chr5 (99054148-99054354)
               

               
               1-124, gnl|rheMac2|chr4 (92471293-92471499)
               

               
               1-124, gnl|rn3|chr5 (40325618-40325412)
               

               
               1-124, gnl|tetNig1|chrUn_random (115526190-115525996)
               

               
               1-124, gnl|xenTro1|scaffold_164 (824669-824875)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               rec (0.17307)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	1-124, gnl\|bosTau2\|chr9 (29320793-29320670)
	1-124, gnl\|canFam2\|chr12 (58009275-58009481)
	1-124, gnl\|danRer3\|chr20 (392833-393013)
	1-124, gnl\|echTel1\|scaffold_323896 (54067-53861)
	1-124, gnl\|fr1\|chrUn (280654370-280654177)
	1-124, gnl\|galGal2\|chr3 (71178351-71178140)
	1-124, gnl\|hg17\|chr6 (97091954-97092160)
	1-124, gnl\|Hg17\|chr6 (97092022-97092145)
	1-124, gnl\|loxAfr1\|scaffold_4124 (42806-42600)
	1-124, gnl\|mm7\|chr4 (25337685-25337479)
	1-124, gnl\|Mm7\|chr4 (25337615-25337492)
	1-124, gnl\|monDom2\|scaffold_0 (128643825-128643619)
	1-124, gnl\|panTro1\|chr5 (99054148-99054354)
	1-124, gnl\|rheMac2\|chr4 (92471293-92471499)
	1-124, gnl\|rn3\|chr5 (40325618-40325412)
	1-124, gnl\|tetNig1\|chrUn_random (115526190-115525996)
	1-124, gnl\|xenTro1\|scaffold_164 (824669-824875)