rrec27_m5.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTTAAATGACTTGGGAAAAAAGATCCAACTTGTTATGAAAGTGATAGAAGCATACAG AAACAAGGATGAAAGATACGATCATCTGGATCCTGCTGAAGTGGAAAAAGTTGAAAAATT TATCAGTGAAGCCATGAGCTGGCTGAACAGTAAGATGAACGCACAGAACAAACTAAGTCT CACTCAAGATCCTGTGGTCAAAGTTGCAGAAATAGTTGCAAAGTCAAAGGAACTGGATAA TTTCTGTAACCCCATCATTTACAAGCCCAAACCGAAAGTAGAGGTTGCTGAAGACAAAGC AAAAGCTAATAGTGAACACAACGGTCCAATGGATGGACAGAGTGGGAGTGAAACTAAACC AGATACAACAAAAGACAGCTCACAGCATACTAAATCTTCTGGAGAGATGGAAGTGGACTA AATCTTAATTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTTAAATGACTTGGGAAAAAAGATCCAACTTGTTATGAAAGTGATAGAAGCATACAG AAACAAGGATGAAAGATACGATCATCTGGATCCTGCTGAAGTGGAAAAAGTTGAAAAATT TATCAGTGAAGCCATGAGCTGGCTGAACAGTAAGATGAACGCACAGAACAAACTAAGTCT CACTCAAGATCCTGTGGTCAAAGTTGCAGAAATAGTTGCAAAGTCAAAGGAACTGGATAA TTTCTGTAACCCCATCATTTACAAGCCCAAACCGAAAGTAGAGGTTGCTGAAGACAAAGC AAAAGCTAATAGTGAACACAACGGTCCAATGGATGGACAGAGTGGGAGTGAAACTAAACC AGATACAACAAAAGACAGCTCACAGCATACTAAATCTTCTGGAGAGATGGAAGTGGACTA AATCTTAATTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 66-157, + strand, RNAz p=0.587026 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-157, + strand, RNAz p=0.587026 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 66-230, gnl|bosTau2|chr17 (18566871-18567035) | |
| 66-230, gnl|canFam2|chr19 (16112427-16112243) | |
| 66-230, gnl|danRer3|chrNA (216183210-216183021) | |
| 66-230, gnl|dasNov1|scaffold_16922 (9923-9737) | |
| 66-230, gnl|echTel1|scaffold_238730 (1821-2014) | |
| 66-230, gnl|fr1|chrUn (69876930-69877122) | |
| 66-230, gnl|galGal2|chr4 (34799996-34800185) | |
| 66-230, gnl|hg17|chr4 (129109378-129109570) | |
| 66-230, gnl|Hg17|chr4 (129109396-129109560) | |
| 66-230, gnl|loxAfr1|scaffold_849 (31235-31067) | |
| 66-230, gnl|mm7|chr3 (40553355-40553547) | |
| 66-230, gnl|Mm7|chr3 (40553373-40553537) | |
| 66-230, gnl|monDom2|scaffold_137 (1252161-1252348) | |
| 66-230, gnl|oryCun1|scaffold_176203 (45579-45388) | |
| 66-230, gnl|panTro1|chr3 (145959789-145959981) | |
| 66-230, gnl|rheMac2|chr5 (120147450-120147646) | |
| 66-230, gnl|rn3|chr2 (127698066-127698258) | |
| 66-230, gnl|tetNig1|chr10 (5434415-5434228) | |
| 300-428, gnl|bosTau2|chr17 (18572111-18572239) | |
| 300-428, gnl|Hg17|chr4 (129111513-129111641) | |
| 300-428, gnl|Mm7|chr3 (40555922-40556042) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-230, gnl|bosTau2|chr17 (18566871-18567035) | |
| 66-230, gnl|canFam2|chr19 (16112427-16112243) | |
| 66-230, gnl|danRer3|chrNA (216183210-216183021) | |
| 66-230, gnl|dasNov1|scaffold_16922 (9923-9737) | |
| 66-230, gnl|echTel1|scaffold_238730 (1821-2014) | |
| 66-230, gnl|fr1|chrUn (69876930-69877122) | |
| 66-230, gnl|galGal2|chr4 (34799996-34800185) | |
| 66-230, gnl|hg17|chr4 (129109378-129109570) | |
| 66-230, gnl|Hg17|chr4 (129109396-129109560) | |
| 66-230, gnl|loxAfr1|scaffold_849 (31235-31067) | |
| 66-230, gnl|mm7|chr3 (40553355-40553547) | |
| 66-230, gnl|Mm7|chr3 (40553373-40553537) | |
| 66-230, gnl|monDom2|scaffold_137 (1252161-1252348) | |
| 66-230, gnl|oryCun1|scaffold_176203 (45579-45388) | |
| 66-230, gnl|panTro1|chr3 (145959789-145959981) | |
| 66-230, gnl|rheMac2|chr5 (120147450-120147646) | |
| 66-230, gnl|rn3|chr2 (127698066-127698258) | |
| 66-230, gnl|tetNig1|chr10 (5434415-5434228) | |
| 300-428, gnl|bosTau2|chr17 (18572111-18572239) | |
| 300-428, gnl|Hg17|chr4 (129111513-129111641) | |
| 300-428, gnl|Mm7|chr3 (40555922-40556042) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.17307) |