Non-Coding RNA Search

rret03_i2.y1

Sequence:


               
               CTGTTGTGTCTACTAATTTACTAATTATTTGTGTGGTAATGCATTTGCACATAATATATT
TTTTACAACAAAGAAAATGTAAATTACATTATGTGATATGTGCCTAATGTTTTCTTAGCA
CAATATATAGATCAATGTTGCTTAAGTCAACAACATTGGAAAAAAAATACAAAAATGTCT
TTGAAGAGAAAAATGCTTTTGTGTAGTTGTTATTTAGATATTTATATAAGAGCGAGCTGC
ATTCTTAGTGCTGCTGAGAACACAGTTACTTAATTATCAAATACAGGTAACAATTGTCAG
TATTTTCTTTTGTAAAGATTTGTTTTCATATTCAGAGGTTAAATTAACTTATTTTTTAGT
GTGCTACATGGAATTATGTAATAAATTGTCAGGGGTTTAGATGTAGCAAAATGGCATTTG
GGAAATTAGTAGTGAAGCAGATGTAAGTGCTAAAACATCATAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTGTGTCTACTAATTTACTAATTATTTGTGTGGTAATGCATTTGCACATAATATATT
TTTTACAACAAAGAAAATGTAAATTACATTATGTGATATGTGCCTAATGTTTTCTTAGCA
CAATATATAGATCAATGTTGCTTAAGTCAACAACATTGGAAAAAAAATACAAAAATGTCT
TTGAAGAGAAAAATGCTTTTGTGTAGTTGTTATTTAGATATTTATATAAGAGCGAGCTGC
ATTCTTAGTGCTGCTGAGAACACAGTTACTTAATTATCAAATACAGGTAACAATTGTCAG
TATTTTCTTTTGTAAAGATTTGTTTTCATATTCAGAGGTTAAATTAACTTATTTTTTAGT
GTGCTACATGGAATTATGTAATAAATTGTCAGGGGTTTAGATGTAGCAAAATGGCATTTG
GGAAATTAGTAGTGAAGCAGATGTAAGTGCTAAAACATCATAAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-290, - strand, RNAz p=0.739891

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-290, - strand, RNAz p=0.739891

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               20-466, gnl|bosTau2|chr16 (44118915-44119361)
               

               
               20-466, gnl|canFam2|chr7 (27827204-27825489)
               

               
               20-466, gnl|dasNov1|scaffold_71484 (4039-5702)
               

               
               20-466, gnl|echTel1|scaffold_325330 (40382-38697)
               

               
               20-466, gnl|galGal2|chr8 (7246759-7245290)
               

               
               20-466, gnl|hg17|chr1 (171150128-171151794)
               

               
               20-466, gnl|Hg17|chr1 (171151097-171151535)
               

               
               20-466, gnl|loxAfr1|scaffold_68535 (5128-3430)
               

               
               20-466, gnl|mm7|chr1 (160538618-160537062)
               

               
               20-466, gnl|Mm7|chr1 (160537688-160537306)
               

               
               20-466, gnl|monDom2|scaffold_16 (25770008-25771723)
               

               
               20-466, gnl|oryCun1|scaffold_202396 (42483-44150)
               

               
               20-466, gnl|panTro1|chr1 (153529908-153531573)
               

               
               20-466, gnl|rheMac2|chr1 (204077762-204079437)
               

               
               20-466, gnl|rn3|chr13 (76031067-76029503)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-466, gnl|bosTau2|chr16 (44118915-44119361)
               

               
               20-466, gnl|canFam2|chr7 (27827204-27825489)
               

               
               20-466, gnl|dasNov1|scaffold_71484 (4039-5702)
               

               
               20-466, gnl|echTel1|scaffold_325330 (40382-38697)
               

               
               20-466, gnl|galGal2|chr8 (7246759-7245290)
               

               
               20-466, gnl|hg17|chr1 (171150128-171151794)
               

               
               20-466, gnl|Hg17|chr1 (171151097-171151535)
               

               
               20-466, gnl|loxAfr1|scaffold_68535 (5128-3430)
               

               
               20-466, gnl|mm7|chr1 (160538618-160537062)
               

               
               20-466, gnl|Mm7|chr1 (160537688-160537306)
               

               
               20-466, gnl|monDom2|scaffold_16 (25770008-25771723)
               

               
               20-466, gnl|oryCun1|scaffold_202396 (42483-44150)
               

               
               20-466, gnl|panTro1|chr1 (153529908-153531573)
               

               
               20-466, gnl|rheMac2|chr1 (204077762-204079437)
               

               
               20-466, gnl|rn3|chr13 (76031067-76029503)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	20-466, gnl\|bosTau2\|chr16 (44118915-44119361)
	20-466, gnl\|canFam2\|chr7 (27827204-27825489)
	20-466, gnl\|dasNov1\|scaffold_71484 (4039-5702)
	20-466, gnl\|echTel1\|scaffold_325330 (40382-38697)
	20-466, gnl\|galGal2\|chr8 (7246759-7245290)
	20-466, gnl\|hg17\|chr1 (171150128-171151794)
	20-466, gnl\|Hg17\|chr1 (171151097-171151535)
	20-466, gnl\|loxAfr1\|scaffold_68535 (5128-3430)
	20-466, gnl\|mm7\|chr1 (160538618-160537062)
	20-466, gnl\|Mm7\|chr1 (160537688-160537306)
	20-466, gnl\|monDom2\|scaffold_16 (25770008-25771723)
	20-466, gnl\|oryCun1\|scaffold_202396 (42483-44150)
	20-466, gnl\|panTro1\|chr1 (153529908-153531573)
	20-466, gnl\|rheMac2\|chr1 (204077762-204079437)
	20-466, gnl\|rn3\|chr13 (76031067-76029503)