Non-Coding RNA Search

rret05_m2.y1

Sequence:


               
               GGCTGAACCATATGAACTTTCTATTTTGTAGTGAAAATGGTCTAATTTCAGTTTTACATG
GTTCCACCTAACAGTAAGTGCTAAATATTTGTTTATTGAATAAATTAATGAACAGGTGAG
TGAATGACTAAGAAGTAGAATTTAACCTTTGGGGAAAGAAAAAAATCCTCATACTGAAGA
GGCTTATTCATGAGTAGAAATGCTTCATGTTTCTTCATCTTTAGTCATGTAACAAGTGAT
ATAAGGTCTCTCCAGTTAGATCATAAAGACCAATCTGAGACCAGAATGTTAGATACTGTG
ATGCCAGCACAAAGGGGAAAGCTAAATGGACAAAGACTGGAATGATAATCAACTAAAACA
TCTGGAACTAAGAACCAGATAGTATGAATGGTAACCTGGCCTCATTCTGTCAAGAACACA
TCTTGAGGCCTTTCATTGCCCCAGAGCTCTGGAGACCTGACTTCTGGGTAGCACAGAAAA
AGATTGCTTCACCTAGAGAGCTGCTTTAACTTCTTTTAATTTAAAAACTTATAAGAATTA
AGCATATAGAAAGACAGATGGAAGCAAGAATTGTCATTTCTATAGACTTTGAGGGACACT
AGAACTAAGGAGTCCAATTCTTAAAAAGTCCTGTCAATATTGCTTCATATTTGACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGAACCATATGAACTTTCTATTTTGTAGTGAAAATGGTCTAATTTCAGTTTTACATG
GTTCCACCTAACAGTAAGTGCTAAATATTTGTTTATTGAATAAATTAATGAACAGGTGAG
TGAATGACTAAGAAGTAGAATTTAACCTTTGGGGAAAGAAAAAAATCCTCATACTGAAGA
GGCTTATTCATGAGTAGAAATGCTTCATGTTTCTTCATCTTTAGTCATGTAACAAGTGAT
ATAAGGTCTCTCCAGTTAGATCATAAAGACCAATCTGAGACCAGAATGTTAGATACTGTG
ATGCCAGCACAAAGGGGAAAGCTAAATGGACAAAGACTGGAATGATAATCAACTAAAACA
TCTGGAACTAAGAACCAGATAGTATGAATGGTAACCTGGCCTCATTCTGTCAAGAACACA
TCTTGAGGCCTTTCATTGCCCCAGAGCTCTGGAGACCTGACTTCTGGGTAGCACAGAAAA
AGATTGCTTCACCTAGAGAGCTGCTTTAACTTCTTTTAATTTAAAAACTTATAAGAATTA
AGCATATAGAAAGACAGATGGAAGCAAGAATTGTCATTTCTATAGACTTTGAGGGACACT
AGAACTAAGGAGTCCAATTCTTAAAAAGTCCTGTCAATATTGCTTCATATTTGACTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               230-344, - strand, RNAz p=0.69618
               

               
               383-497, - strand, RNAz p=0.508596

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-344, - strand, RNAz p=0.69618
               

               
               383-497, - strand, RNAz p=0.508596

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               227-335, + strand, RNAmicro p=0.988544

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               227-335, + strand, RNAmicro p=0.988544

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               4-366, gnl|bosTau2|chr17 (36804942-36804574)
               

               
               4-366, gnl|Hg17|chr12 (110831382-110831003)
               


               
               383-658, gnl|bosTau2|chr17 (36803948-36803685)
               

               
               383-658, gnl|Hg17|chr12 (110830767-110829652)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-366, gnl|bosTau2|chr17 (36804942-36804574)
               

               
               4-366, gnl|Hg17|chr12 (110831382-110831003)
               


               
               383-658, gnl|bosTau2|chr17 (36803948-36803685)
               

               
               383-658, gnl|Hg17|chr12 (110830767-110829652)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	230-344, - strand, RNAz p=0.69618
	383-497, - strand, RNAz p=0.508596

	4-366, gnl\|bosTau2\|chr17 (36804942-36804574)
	4-366, gnl\|Hg17\|chr12 (110831382-110831003)

	383-658, gnl\|bosTau2\|chr17 (36803948-36803685)
	383-658, gnl\|Hg17\|chr12 (110830767-110829652)