Non-Coding RNA Search

rret15_f12.y1

Sequence:


               
               GCATAATTGATGAAGGACCTTAAGGGAATAATTATTTCTCATGACTTTTAATGAGAAATC
AAAGGAGAATGAAAGATTTTAAGGTTTTCAGCAATGACTGCATGGCCTTTGTCATATAAA
TTAGAGAAGGTCAAGAACACTTACACTCTGGTGCCGATTGAAGGCTGATACCTAAGAAAA
ATATCCACAGTCGAACAAAGAACAGGGCATGAAAACACTTGACCTGACTGGGGTAAGCCC
AAGGACTGTATGGCACTCCAGTTACTGACAAGCCATGGTCTTGTTTTGGCCAGGTTGACT
CCTTGATATGAGGTACGAAACCAGACAAAAAGCCACATCGCTCAGGGACAGATTGAGCAA
ACGATCTGATGACTCAGTCTGAATGCAGATTATTACCATTTATTGTCTGTTTTTCTCCCT
GTCTTCTACCCCATTATTTTTTAAAAACTGTACTGTAACTCACTGAAAAATATCTAGTAT
GGCAATATGAAATACCAGATGAAAAAAAAAATGCCAAACAGAAAATAGAAGCAAAACAGA
TACGAAATATACCTCTCAGTTCTTTTACGAAAGTCTTAAATGTAGTTCTCTTGTGGCTCA
GAGTCACTGCTGTGGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATAATTGATGAAGGACCTTAAGGGAATAATTATTTCTCATGACTTTTAATGAGAAATC
AAAGGAGAATGAAAGATTTTAAGGTTTTCAGCAATGACTGCATGGCCTTTGTCATATAAA
TTAGAGAAGGTCAAGAACACTTACACTCTGGTGCCGATTGAAGGCTGATACCTAAGAAAA
ATATCCACAGTCGAACAAAGAACAGGGCATGAAAACACTTGACCTGACTGGGGTAAGCCC
AAGGACTGTATGGCACTCCAGTTACTGACAAGCCATGGTCTTGTTTTGGCCAGGTTGACT
CCTTGATATGAGGTACGAAACCAGACAAAAAGCCACATCGCTCAGGGACAGATTGAGCAA
ACGATCTGATGACTCAGTCTGAATGCAGATTATTACCATTTATTGTCTGTTTTTCTCCCT
GTCTTCTACCCCATTATTTTTTAAAAACTGTACTGTAACTCACTGAAAAATATCTAGTAT
GGCAATATGAAATACCAGATGAAAAAAAAAATGCCAAACAGAAAATAGAAGCAAAACAGA
TACGAAATATACCTCTCAGTTCTTTTACGAAAGTCTTAAATGTAGTTCTCTTGTGGCTCA
GAGTCACTGCTGTGGTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-441, - strand, RNAz p=0.579247

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-441, - strand, RNAz p=0.579247

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-441, gnl|bosTau2|chr4 (24830859-24831298)
               

               
               1-441, gnl|Mm7|chr6 (18363152-18362765)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-441, gnl|bosTau2|chr4 (24830859-24831298)
               

               
               1-441, gnl|Mm7|chr6 (18363152-18362765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	1-441, gnl\|bosTau2\|chr4 (24830859-24831298)
	1-441, gnl\|Mm7\|chr6 (18363152-18362765)