Non-Coding RNA Search

rret18_i2.y1

Sequence:


               
               TTATTTCTTTGCTTTAATTTCATGATGAATTATTTTGGTATGTCTGTTAATTGAAAAAAA
CAAATGTGGAGATTTTACTGCACCCAGAGTACATTTTTTATAAACATTTTTGCAATAGAA
GAGAAGCAGAATTTAGGGAAAATGTATGGATTTTACTAATTGCTACTTTATAGTAAATTA
GGAGTTTTAAAGTATCAATTTACAGTCTCTACTGACTTGTTAAGGGAAACTTTTTTTCCC
TATTTAAAACATGATTTTGGTCAAGTTTATTTATAATTACCAGCTGGTAAAACTACATTT
AGTACAAAGTAATTAAATAGAAAAATGAGTATGTTTATACCTTTATCAATCCAGTGAAGT
AAACCAAGCATTCAAGAAAAAATTATTTTAATTAATACACTAACGGTTAATTAAGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTCTTTGCTTTAATTTCATGATGAATTATTTTGGTATGTCTGTTAATTGAAAAAAA
CAAATGTGGAGATTTTACTGCACCCAGAGTACATTTTTTATAAACATTTTTGCAATAGAA
GAGAAGCAGAATTTAGGGAAAATGTATGGATTTTACTAATTGCTACTTTATAGTAAATTA
GGAGTTTTAAAGTATCAATTTACAGTCTCTACTGACTTGTTAAGGGAAACTTTTTTTCCC
TATTTAAAACATGATTTTGGTCAAGTTTATTTATAATTACCAGCTGGTAAAACTACATTT
AGTACAAAGTAATTAAATAGAAAAATGAGTATGTTTATACCTTTATCAATCCAGTGAAGT
AAACCAAGCATTCAAGAAAAAATTATTTTAATTAATACACTAACGGTTAATTAAGATAC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               2-419, gnl|bosTau2|chr5 (17512009-17512426)
               

               
               2-419, gnl|canFam2|chr15 (38014529-38014972)
               

               
               2-419, gnl|echTel1|scaffold_319075 (46958-47426)
               

               
               2-419, gnl|hg17|chr12 (93916555-93916965)
               

               
               2-419, gnl|Hg17|chr12 (93917007-93916610)
               

               
               2-419, gnl|loxAfr1|scaffold_2836 (73413-72997)
               

               
               2-419, gnl|mm7|chr10 (93756093-93755629)
               

               
               2-419, gnl|Mm7|chr10 (93755486-93756037)
               

               
               2-419, gnl|monDom2|scaffold_34 (21055015-21054579)
               

               
               2-419, gnl|oryCun1|scaffold_161214 (568-155)
               

               
               2-419, gnl|panTro1|chr10 (96221588-96222003)
               

               
               2-419, gnl|rheMac2|chr11 (96258446-96258805)
               

               
               2-419, gnl|rn3|chr7 (31366894-31366433)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-419, gnl|bosTau2|chr5 (17512009-17512426)
               

               
               2-419, gnl|canFam2|chr15 (38014529-38014972)
               

               
               2-419, gnl|echTel1|scaffold_319075 (46958-47426)
               

               
               2-419, gnl|hg17|chr12 (93916555-93916965)
               

               
               2-419, gnl|Hg17|chr12 (93917007-93916610)
               

               
               2-419, gnl|loxAfr1|scaffold_2836 (73413-72997)
               

               
               2-419, gnl|mm7|chr10 (93756093-93755629)
               

               
               2-419, gnl|Mm7|chr10 (93755486-93756037)
               

               
               2-419, gnl|monDom2|scaffold_34 (21055015-21054579)
               

               
               2-419, gnl|oryCun1|scaffold_161214 (568-155)
               

               
               2-419, gnl|panTro1|chr10 (96221588-96222003)
               

               
               2-419, gnl|rheMac2|chr11 (96258446-96258805)
               

               
               2-419, gnl|rn3|chr7 (31366894-31366433)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.128733)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	2-419, gnl\|bosTau2\|chr5 (17512009-17512426)
	2-419, gnl\|canFam2\|chr15 (38014529-38014972)
	2-419, gnl\|echTel1\|scaffold_319075 (46958-47426)
	2-419, gnl\|hg17\|chr12 (93916555-93916965)
	2-419, gnl\|Hg17\|chr12 (93917007-93916610)
	2-419, gnl\|loxAfr1\|scaffold_2836 (73413-72997)
	2-419, gnl\|mm7\|chr10 (93756093-93755629)
	2-419, gnl\|Mm7\|chr10 (93755486-93756037)
	2-419, gnl\|monDom2\|scaffold_34 (21055015-21054579)
	2-419, gnl\|oryCun1\|scaffold_161214 (568-155)
	2-419, gnl\|panTro1\|chr10 (96221588-96222003)
	2-419, gnl\|rheMac2\|chr11 (96258446-96258805)
	2-419, gnl\|rn3\|chr7 (31366894-31366433)