Non-Coding RNA Search

rret24_p17.y1

Sequence:


               
               CTCATCTCCAAATATTTTTCTTAAACAAATTTAGCCATTCTGAATTTTTTTGAAGAATTG
GATCTTTGAAGGCCATAGCTAAATGATATGGATGACTAATTTTTCATTACCCTTTTTTTT
TAAAGGTATCATAGATTAGCTTTAAAAAATTTGTGCTTATCTGAGAGTTCTATTTAAATA
GCTTCAAACATTAGTGAAGTAAGTTTTGGAGTAAGCCCAAAGTTATAGTGTTTCTTAGGC
TTCTGTAGAACCAAGTTATACTTTATGACACACTTTAAATGAGCTCATCAGCTGATGTGA
TTTCTAGACAGATTGCCAATAGGTGAAAAAAATTTCAAGAAAAGGTTTAAATGGAGATAA
ACTGTGTTTTGTGGTTATTACAGCATTGCATAAACAGGGGCATAAAGTGCACTCATATGT
TTAGGTCAGAGTAGCTTTACTACCATTAATCTATTGAGACAAATACCATTTTATGGACTA
ACAGTCTTTTTTTGTTTATTTGTTTTCAGTATCAGTATAGTCTCTTCAAAAATAGAATAT
AAAATACTTTCTTTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTCCAAATATTTTTCTTAAACAAATTTAGCCATTCTGAATTTTTTTGAAGAATTG
GATCTTTGAAGGCCATAGCTAAATGATATGGATGACTAATTTTTCATTACCCTTTTTTTT
TAAAGGTATCATAGATTAGCTTTAAAAAATTTGTGCTTATCTGAGAGTTCTATTTAAATA
GCTTCAAACATTAGTGAAGTAAGTTTTGGAGTAAGCCCAAAGTTATAGTGTTTCTTAGGC
TTCTGTAGAACCAAGTTATACTTTATGACACACTTTAAATGAGCTCATCAGCTGATGTGA
TTTCTAGACAGATTGCCAATAGGTGAAAAAAATTTCAAGAAAAGGTTTAAATGGAGATAA
ACTGTGTTTTGTGGTTATTACAGCATTGCATAAACAGGGGCATAAAGTGCACTCATATGT
TTAGGTCAGAGTAGCTTTACTACCATTAATCTATTGAGACAAATACCATTTTATGGACTA
ACAGTCTTTTTTTGTTTATTTGTTTTCAGTATCAGTATAGTCTCTTCAAAAATAGAATAT
AAAATACTTTCTTTTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-262, - strand, RNAz p=0.99377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-262, - strand, RNAz p=0.99377

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-550, gnl|bosTau2|chr10 (2497400-2496881)
               

               
               10-550, gnl|Hg17|chr5 (76793565-76792707)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-550, gnl|bosTau2|chr10 (2497400-2496881)
               

               
               10-550, gnl|Hg17|chr5 (76793565-76792707)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	10-550, gnl\|bosTau2\|chr10 (2497400-2496881)
	10-550, gnl\|Hg17\|chr5 (76793565-76792707)