rret26_i9.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCTATTGAATCATGAATGCTTACAAAGAACATAATTAAAAGTAAAACCTCTGAGAAGG TTTGGGGAAAAATCCAGTTCTCAGAAATACATGAGATAAAATTCATACTGAGACTTTTTC TCTTGCTATCAGGAATAGGTTCAGAAGAATGCTAAGTTCCCTTGACCATATTTTTTAAAA AAAATGTGGCGTTATTGTTTGATGCGAAGAATGCATCAGGACCAGAGTTGTTAGCCTGGC TTTGCCACTAACTTGCTCTATAACACTGGCCTGCTTGTGTCCCTTCCCTGGGCCACTGAT TCCCCACCTGGGCAAAGCAAAGTTTATAAAATGTGGACAGAAACTGGACTGGCTACACAT GAATCATCAGGGAGAATCCAGAATGTCCATCACTGGGGAAATGGTTAAATCAACCACAAT AAGCCACATCATGGAATTCTCTGCAGCTGTCAAGCAGAACGAGGCAGACATATGTGTACT GATGTGGAAAGATGTCCAAGTTATATTAAGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCTATTGAATCATGAATGCTTACAAAGAACATAATTAAAAGTAAAACCTCTGAGAAGG TTTGGGGAAAAATCCAGTTCTCAGAAATACATGAGATAAAATTCATACTGAGACTTTTTC TCTTGCTATCAGGAATAGGTTCAGAAGAATGCTAAGTTCCCTTGACCATATTTTTTAAAA AAAATGTGGCGTTATTGTTTGATGCGAAGAATGCATCAGGACCAGAGTTGTTAGCCTGGC TTTGCCACTAACTTGCTCTATAACACTGGCCTGCTTGTGTCCCTTCCCTGGGCCACTGAT TCCCCACCTGGGCAAAGCAAAGTTTATAAAATGTGGACAGAAACTGGACTGGCTACACAT GAATCATCAGGGAGAATCCAGAATGTCCATCACTGGGGAAATGGTTAAATCAACCACAAT AAGCCACATCATGGAATTCTCTGCAGCTGTCAAGCAGAACGAGGCAGACATATGTGTACT GATGTGGAAAGATGTCCAAGTTATATTAAGTTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-156, - strand, RNAz p=0.96884 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-156, - strand, RNAz p=0.96884 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 6-210, gnl|bosTau2|chr21 (1411005-1411216) | |
| 6-210, gnl|canFam2|chr3 (61320251-61320503) | |
| 6-210, gnl|dasNov1|scaffold_99335 (476-748) | |
| 6-210, gnl|echTel1|scaffold_45492 (947-620) | |
| 6-210, gnl|hg17|chr15 (76438035-76438310) | |
| 6-210, gnl|Hg17|chr15 (76438119-76438297) | |
| 6-210, gnl|mm7|chr9 (54811669-54811931) | |
| 6-210, gnl|oryCun1|scaffold_99731 (2172-1898) | |
| 6-210, gnl|panTro1|chr16 (77094759-77095032) | |
| 6-210, gnl|rheMac2|chr7 (57398726-57399016) | |
| 6-210, gnl|rn3|chr8 (58353340-58353607) | |
| 218-506, gnl|bosTau2|chr21 (1411511-1411802) | |
| 218-506, gnl|canFam2|chr3 (61320545-61321033) | |
| 218-506, gnl|dasNov1|scaffold_99335 (788-1287) | |
| 218-506, gnl|echTel1|scaffold_45492 (573-64) | |
| 218-506, gnl|hg17|chr15 (76438361-76438904) | |
| 218-506, gnl|Hg17|chr15 (76438362-76438662) | |
| 218-506, gnl|mm7|chr9 (54811980-54812428) | |
| 218-506, gnl|oryCun1|scaffold_99731 (1849-1258) | |
| 218-506, gnl|panTro1|chr16 (77095083-77095628) | |
| 218-506, gnl|rheMac2|chr7 (57399067-57399606) | |
| 218-506, gnl|rn3|chr8 (58353656-58354104) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-210, gnl|bosTau2|chr21 (1411005-1411216) | |
| 6-210, gnl|canFam2|chr3 (61320251-61320503) | |
| 6-210, gnl|dasNov1|scaffold_99335 (476-748) | |
| 6-210, gnl|echTel1|scaffold_45492 (947-620) | |
| 6-210, gnl|hg17|chr15 (76438035-76438310) | |
| 6-210, gnl|Hg17|chr15 (76438119-76438297) | |
| 6-210, gnl|mm7|chr9 (54811669-54811931) | |
| 6-210, gnl|oryCun1|scaffold_99731 (2172-1898) | |
| 6-210, gnl|panTro1|chr16 (77094759-77095032) | |
| 6-210, gnl|rheMac2|chr7 (57398726-57399016) | |
| 6-210, gnl|rn3|chr8 (58353340-58353607) | |
| 218-506, gnl|bosTau2|chr21 (1411511-1411802) | |
| 218-506, gnl|canFam2|chr3 (61320545-61321033) | |
| 218-506, gnl|dasNov1|scaffold_99335 (788-1287) | |
| 218-506, gnl|echTel1|scaffold_45492 (573-64) | |
| 218-506, gnl|hg17|chr15 (76438361-76438904) | |
| 218-506, gnl|Hg17|chr15 (76438362-76438662) | |
| 218-506, gnl|mm7|chr9 (54811980-54812428) | |
| 218-506, gnl|oryCun1|scaffold_99731 (1849-1258) | |
| 218-506, gnl|panTro1|chr16 (77095083-77095628) | |
| 218-506, gnl|rheMac2|chr7 (57399067-57399606) | |
| 218-506, gnl|rn3|chr8 (58353656-58354104) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.128733) |