Non-Coding RNA Search

rret26_j13.y1

Sequence:


               
               CTCAGAACTACCAATAAAGGAAAATTACAGAGAAACCCAAATATCCTATCAGGATACTTT
GCAAAACTGTTCCTGATTTTTTTTGTGAGACTTTGAGAATTTAAACTAGCTTCAGCAATA
TCTAAAATGTCTATGAAAACACATGGGTAAAGCAAGAAATTCTCATCACGAAGATACTAA
AAAAATTTTTCATATAGAAAATACCCACTGTTAAAACTGCACAGATTTTTTTTCTGAAAA
TGAACTTAAATTGATAAAAACAATAATGAAAATAATAATGATCTCATCCCAAGACATGTC
ATAGGAATTAATGACTGTCTGGAAGCTAATGGGCTAAGGTAATGCTCTCAGGAATTAGTC
TTGCTTAATGAAATGCTGTTAGTTTAGTAAACGAATGCTTATAATGACAGAAAGTAAAAA
AACAAGGCTGCCACCATTGAGCCTGCTTGACTCACAGGGGGAAAAAAATGTTAATTTGTC
ATGTGCTGTACTTATTCATTTTTTTCTATTCATTTGTAATATATCCTTTATATTTTTTCT
TTCATACATTGATCTACTTTTAGTCTGAAGAAATGTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGAACTACCAATAAAGGAAAATTACAGAGAAACCCAAATATCCTATCAGGATACTTT
GCAAAACTGTTCCTGATTTTTTTTGTGAGACTTTGAGAATTTAAACTAGCTTCAGCAATA
TCTAAAATGTCTATGAAAACACATGGGTAAAGCAAGAAATTCTCATCACGAAGATACTAA
AAAAATTTTTCATATAGAAAATACCCACTGTTAAAACTGCACAGATTTTTTTTCTGAAAA
TGAACTTAAATTGATAAAAACAATAATGAAAATAATAATGATCTCATCCCAAGACATGTC
ATAGGAATTAATGACTGTCTGGAAGCTAATGGGCTAAGGTAATGCTCTCAGGAATTAGTC
TTGCTTAATGAAATGCTGTTAGTTTAGTAAACGAATGCTTATAATGACAGAAAGTAAAAA
AACAAGGCTGCCACCATTGAGCCTGCTTGACTCACAGGGGGAAAAAAATGTTAATTTGTC
ATGTGCTGTACTTATTCATTTTTTTCTATTCATTTGTAATATATCCTTTATATTTTTTCT
TTCATACATTGATCTACTTTTAGTCTGAAGAAATGTTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-368, - strand, RNAz p=0.563412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-368, - strand, RNAz p=0.563412

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               178-580, gnl|bosTau2|chr4 (26908224-26907819)
               

               
               178-580, gnl|canFam2|chr14 (58681114-58681380)
               

               
               178-580, gnl|dasNov1|scaffold_10190 (9035-9303)
               

               
               178-580, gnl|echTel1|scaffold_321327 (131997-132280)
               

               
               178-580, gnl|hg17|chr7 (116037251-116037515)
               

               
               178-580, gnl|Hg17|chr7 (116037250-116037701)
               

               
               178-580, gnl|loxAfr1|scaffold_197 (184006-184273)
               

               
               178-580, gnl|mm7|chr6 (17522068-17522313)
               

               
               178-580, gnl|Mm7|chr6 (17522059-17522491)
               

               
               178-580, gnl|monDom2|scaffold_22 (32182611-32182366)
               

               
               178-580, gnl|oryCun1|scaffold_178631 (29929-29678)
               

               
               178-580, gnl|panTro1|chr6 (118326745-118327009)
               

               
               178-580, gnl|rheMac2|chr3 (154142833-154143096)
               

               
               178-580, gnl|rn3|chr4 (43367733-43367981)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-580, gnl|bosTau2|chr4 (26908224-26907819)
               

               
               178-580, gnl|canFam2|chr14 (58681114-58681380)
               

               
               178-580, gnl|dasNov1|scaffold_10190 (9035-9303)
               

               
               178-580, gnl|echTel1|scaffold_321327 (131997-132280)
               

               
               178-580, gnl|hg17|chr7 (116037251-116037515)
               

               
               178-580, gnl|Hg17|chr7 (116037250-116037701)
               

               
               178-580, gnl|loxAfr1|scaffold_197 (184006-184273)
               

               
               178-580, gnl|mm7|chr6 (17522068-17522313)
               

               
               178-580, gnl|Mm7|chr6 (17522059-17522491)
               

               
               178-580, gnl|monDom2|scaffold_22 (32182611-32182366)
               

               
               178-580, gnl|oryCun1|scaffold_178631 (29929-29678)
               

               
               178-580, gnl|panTro1|chr6 (118326745-118327009)
               

               
               178-580, gnl|rheMac2|chr3 (154142833-154143096)
               

               
               178-580, gnl|rn3|chr4 (43367733-43367981)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	178-580, gnl\|bosTau2\|chr4 (26908224-26907819)
	178-580, gnl\|canFam2\|chr14 (58681114-58681380)
	178-580, gnl\|dasNov1\|scaffold_10190 (9035-9303)
	178-580, gnl\|echTel1\|scaffold_321327 (131997-132280)
	178-580, gnl\|hg17\|chr7 (116037251-116037515)
	178-580, gnl\|Hg17\|chr7 (116037250-116037701)
	178-580, gnl\|loxAfr1\|scaffold_197 (184006-184273)
	178-580, gnl\|mm7\|chr6 (17522068-17522313)
	178-580, gnl\|Mm7\|chr6 (17522059-17522491)
	178-580, gnl\|monDom2\|scaffold_22 (32182611-32182366)
	178-580, gnl\|oryCun1\|scaffold_178631 (29929-29678)
	178-580, gnl\|panTro1\|chr6 (118326745-118327009)
	178-580, gnl\|rheMac2\|chr3 (154142833-154143096)
	178-580, gnl\|rn3\|chr4 (43367733-43367981)