Non-Coding RNA Search

rret29_i20.y1

Sequence:


               
               AGGAGTTCAGACAGTTTTCTGAGAATTGTTTAACCGTGTAGATTAAATGGAAATATATTT
TCTATAATGAAACTTGTCAGAATAAGAGGGAATCAACTATTTACATTCATTAGATAACTA
TCTAGGTAAGCATGTTTTAAAAAGGTAAATATTTGTAGGGGTTATTAGTATTGAATGCTA
ACTTGCTTGTGAGATTTCAGAAACTTGATGAGGAAAAGAACATGAATACCTTAAGATATT
GTTATTTCCACTAAAATATGGGTTATATCACTTTGTACATATAAATGAAACTCAAGCATG
CTGAGGGAAAAGTGTCTTTGATTAGAAGAACCAGCTTAGACAACTATTTCTAAAGCTTCA
ATCATTTNGGAGTCGCCATACGACTTCAATGATATCCCATTACCACTTGCATAATACTGT
AATTTAATATTTTTAAATTTACTAACTTTTAAAAATTAGGGTTAATTTAGCCTCATCTTC
ATATATTTTCAAAATGATGGATTTGAAGTATTGTTTATACTTTTTTCTAATATGCATTGC
AGTAAATACCAAGTAGTTAAAATAACATTTATCCCTGTGCTACCTAAAATCATCTTATTT
ATAACCACACTTTCAGAAACTGTTCTCAGCTATTAGAGTATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGTTCAGACAGTTTTCTGAGAATTGTTTAACCGTGTAGATTAAATGGAAATATATTT
TCTATAATGAAACTTGTCAGAATAAGAGGGAATCAACTATTTACATTCATTAGATAACTA
TCTAGGTAAGCATGTTTTAAAAAGGTAAATATTTGTAGGGGTTATTAGTATTGAATGCTA
ACTTGCTTGTGAGATTTCAGAAACTTGATGAGGAAAAGAACATGAATACCTTAAGATATT
GTTATTTCCACTAAAATATGGGTTATATCACTTTGTACATATAAATGAAACTCAAGCATG
CTGAGGGAAAAGTGTCTTTGATTAGAAGAACCAGCTTAGACAACTATTTCTAAAGCTTCA
ATCATTTNGGAGTCGCCATACGACTTCAATGATATCCCATTACCACTTGCATAATACTGT
AATTTAATATTTTTAAATTTACTAACTTTTAAAAATTAGGGTTAATTTAGCCTCATCTTC
ATATATTTTCAAAATGATGGATTTGAAGTATTGTTTATACTTTTTTCTAATATGCATTGC
AGTAAATACCAAGTAGTTAAAATAACATTTATCCCTGTGCTACCTAAAATCATCTTATTT
ATAACCACACTTTCAGAAACTGTTCTCAGCTATTAGAGTATAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-286, gnl|bosTau2|chr20 (13584259-13584550)
               

               
               1-286, gnl|Hg17|chr5 (55024300-55024003)
               

               
               1-286, gnl|Mm7|chr13 (109829289-109829760)
               


               
               438-647, gnl|bosTau2|chr20 (13584569-13584773)
               

               
               438-647, gnl|Hg17|chr5 (55023971-55023641)
               

               
               438-647, gnl|Mm7|chr13 (109829847-109830052)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr20 (13584259-13584550)
               

               
               1-286, gnl|Hg17|chr5 (55024300-55024003)
               

               
               1-286, gnl|Mm7|chr13 (109829289-109829760)
               


               
               438-647, gnl|bosTau2|chr20 (13584569-13584773)
               

               
               438-647, gnl|Hg17|chr5 (55023971-55023641)
               

               
               438-647, gnl|Mm7|chr13 (109829847-109830052)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	1-286, gnl\|bosTau2\|chr20 (13584259-13584550)
	1-286, gnl\|Hg17\|chr5 (55024300-55024003)
	1-286, gnl\|Mm7\|chr13 (109829289-109829760)

	438-647, gnl\|bosTau2\|chr20 (13584569-13584773)
	438-647, gnl\|Hg17\|chr5 (55023971-55023641)
	438-647, gnl\|Mm7\|chr13 (109829847-109830052)