Non-Coding RNA Search

rret33_j17.y1

Sequence:


               
               GAATAACTCAGTTAATAATGAAGAGTGGTTTAAATTTATAACTTTTTTCATATGTATAGA
AATATATACATTAGCTACTTAAATAAATCCTGTGTTTTCACATAACTGTGGCTGAGAATA
TGTAATGTATAGCTATAATCATGTTGAGGCCTAGAAATAAAATGATTTGCCCTCTTCTTT
ATTTGACCCTATTAGATTTTGCAACTGATTTAAGAAGAATGCTGCTTTGTGATTGGTATT
TATTGCCAGAGTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAACTCAGTTAATAATGAAGAGTGGTTTAAATTTATAACTTTTTTCATATGTATAGA
AATATATACATTAGCTACTTAAATAAATCCTGTGTTTTCACATAACTGTGGCTGAGAATA
TGTAATGTATAGCTATAATCATGTTGAGGCCTAGAAATAAAATGATTTGCCCTCTTCTTT
ATTTGACCCTATTAGATTTTGCAACTGATTTAAGAAGAATGCTGCTTTGTGATTGGTATT
TATTGCCAGAGTTTTC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               65-256, gnl|bosTau2|chr1 (11959502-11959693)
               

               
               65-256, gnl|canFam2|chr31 (16314984-16315257)
               

               
               65-256, gnl|dasNov1|scaffold_676 (40614-40343)
               

               
               65-256, gnl|echTel1|scaffold_319093 (220270-220556)
               

               
               65-256, gnl|hg17|chr21 (16884891-16885181)
               

               
               65-256, gnl|Hg17|chr21 (16884890-16885082)
               

               
               65-256, gnl|loxAfr1|scaffold_223570 (265-27)
               

               
               65-256, gnl|mm7|chr16 (77643996-77644263)
               

               
               65-256, gnl|Mm7|chr16 (77643994-77644184)
               

               
               65-256, gnl|monDom2|scaffold_29 (1004458-1004729)
               

               
               65-256, gnl|oryCun1|scaffold_181976 (44936-45214)
               

               
               65-256, gnl|panTro1|chr22 (16956109-16956399)
               

               
               65-256, gnl|rheMac2|chr3 (30313483-30313194)
               

               
               65-256, gnl|rn3|chr11 (16444115-16444382)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-256, gnl|bosTau2|chr1 (11959502-11959693)
               

               
               65-256, gnl|canFam2|chr31 (16314984-16315257)
               

               
               65-256, gnl|dasNov1|scaffold_676 (40614-40343)
               

               
               65-256, gnl|echTel1|scaffold_319093 (220270-220556)
               

               
               65-256, gnl|hg17|chr21 (16884891-16885181)
               

               
               65-256, gnl|Hg17|chr21 (16884890-16885082)
               

               
               65-256, gnl|loxAfr1|scaffold_223570 (265-27)
               

               
               65-256, gnl|mm7|chr16 (77643996-77644263)
               

               
               65-256, gnl|Mm7|chr16 (77643994-77644184)
               

               
               65-256, gnl|monDom2|scaffold_29 (1004458-1004729)
               

               
               65-256, gnl|oryCun1|scaffold_181976 (44936-45214)
               

               
               65-256, gnl|panTro1|chr22 (16956109-16956399)
               

               
               65-256, gnl|rheMac2|chr3 (30313483-30313194)
               

               
               65-256, gnl|rn3|chr11 (16444115-16444382)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.128733)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	65-256, gnl\|bosTau2\|chr1 (11959502-11959693)
	65-256, gnl\|canFam2\|chr31 (16314984-16315257)
	65-256, gnl\|dasNov1\|scaffold_676 (40614-40343)
	65-256, gnl\|echTel1\|scaffold_319093 (220270-220556)
	65-256, gnl\|hg17\|chr21 (16884891-16885181)
	65-256, gnl\|Hg17\|chr21 (16884890-16885082)
	65-256, gnl\|loxAfr1\|scaffold_223570 (265-27)
	65-256, gnl\|mm7\|chr16 (77643996-77644263)
	65-256, gnl\|Mm7\|chr16 (77643994-77644184)
	65-256, gnl\|monDom2\|scaffold_29 (1004458-1004729)
	65-256, gnl\|oryCun1\|scaffold_181976 (44936-45214)
	65-256, gnl\|panTro1\|chr22 (16956109-16956399)
	65-256, gnl\|rheMac2\|chr3 (30313483-30313194)
	65-256, gnl\|rn3\|chr11 (16444115-16444382)