Non-Coding RNA Search

rret35_b2.y1

Sequence:


               
               TCATTGTAGGAAAAAAAAGGAAAATCCTGAAAAGTAAAGAGAAAAAAATTCATCAGCAAT
CCAGCCCTTTGGAGACATTTTGGAGAAATTAACTTTACTTCTTTTCTCCCCGGGTTTATA
TGGACACAGGTGTGTTTTATGTAGTGTGTGTGTGGGTGCATGTGTGTGTATTCTTTGTGA
TAAACTTAGAATCTTAATGTATATGTTGTTTTGAAATGTGCTTTTTATTATTTTAGCAAG
GTGTAGTGGCATAAACATTTCCCCATGCCATTACATACTCTCCTGTAATATCACTTAAAT
AATTTTCCCTGCTTATGGTGGAGGGAATAAAGCTCATTGTCGCTCACTCCATCAGTTCAG
AAATATAAAGACAAAATAGAATCACTGTTTTGTATCTATGCTTTGAGACTTTCCCCCCCT
ATTCTTGATCATCTTTAGAAGAGCTATTTACTTGTGGGTGGAAATATTTGTCAGGATTAT
GATCTGACATGCCTTAGCTCTTACTGGTGTTTATTCCAAGAGGGAAATTGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTGTAGGAAAAAAAAGGAAAATCCTGAAAAGTAAAGAGAAAAAAATTCATCAGCAAT
CCAGCCCTTTGGAGACATTTTGGAGAAATTAACTTTACTTCTTTTCTCCCCGGGTTTATA
TGGACACAGGTGTGTTTTATGTAGTGTGTGTGTGGGTGCATGTGTGTGTATTCTTTGTGA
TAAACTTAGAATCTTAATGTATATGTTGTTTTGAAATGTGCTTTTTATTATTTTAGCAAG
GTGTAGTGGCATAAACATTTCCCCATGCCATTACATACTCTCCTGTAATATCACTTAAAT
AATTTTCCCTGCTTATGGTGGAGGGAATAAAGCTCATTGTCGCTCACTCCATCAGTTCAG
AAATATAAAGACAAAATAGAATCACTGTTTTGTATCTATGCTTTGAGACTTTCCCCCCCT
ATTCTTGATCATCTTTAGAAGAGCTATTTACTTGTGGGTGGAAATATTTGTCAGGATTAT
GATCTGACATGCCTTAGCTCTTACTGGTGTTTATTCCAAGAGGGAAATTGAGTA

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               187-457, gnl|bosTau2|chr2 (53278105-53277839)
               

               
               187-457, gnl|canFam2|chr37 (9133367-9133669)
               

               
               187-457, gnl|dasNov1|scaffold_5596 (46362-46011)
               

               
               187-457, gnl|echTel1|scaffold_178478 (3041-2785)
               

               
               187-457, gnl|hg17|chr2 (197178543-197178867)
               

               
               187-457, gnl|Hg17|chr2 (197178838-197178567)
               

               
               187-457, gnl|loxAfr1|scaffold_42241 (5550-5257)
               

               
               187-457, gnl|mm7|chr1 (54333979-54334272)
               

               
               187-457, gnl|Mm7|chr1 (54334243-54334007)
               

               
               187-457, gnl|panTro1|chr13 (87098112-87098434)
               

               
               187-457, gnl|rheMac2|chr12 (60127487-60127811)
               

               
               187-457, gnl|rn3|chr9 (52903292-52903583)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-457, gnl|bosTau2|chr2 (53278105-53277839)
               

               
               187-457, gnl|canFam2|chr37 (9133367-9133669)
               

               
               187-457, gnl|dasNov1|scaffold_5596 (46362-46011)
               

               
               187-457, gnl|echTel1|scaffold_178478 (3041-2785)
               

               
               187-457, gnl|hg17|chr2 (197178543-197178867)
               

               
               187-457, gnl|Hg17|chr2 (197178838-197178567)
               

               
               187-457, gnl|loxAfr1|scaffold_42241 (5550-5257)
               

               
               187-457, gnl|mm7|chr1 (54333979-54334272)
               

               
               187-457, gnl|Mm7|chr1 (54334243-54334007)
               

               
               187-457, gnl|panTro1|chr13 (87098112-87098434)
               

               
               187-457, gnl|rheMac2|chr12 (60127487-60127811)
               

               
               187-457, gnl|rn3|chr9 (52903292-52903583)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	187-457, gnl\|bosTau2\|chr2 (53278105-53277839)
	187-457, gnl\|canFam2\|chr37 (9133367-9133669)
	187-457, gnl\|dasNov1\|scaffold_5596 (46362-46011)
	187-457, gnl\|echTel1\|scaffold_178478 (3041-2785)
	187-457, gnl\|hg17\|chr2 (197178543-197178867)
	187-457, gnl\|Hg17\|chr2 (197178838-197178567)
	187-457, gnl\|loxAfr1\|scaffold_42241 (5550-5257)
	187-457, gnl\|mm7\|chr1 (54333979-54334272)
	187-457, gnl\|Mm7\|chr1 (54334243-54334007)
	187-457, gnl\|panTro1\|chr13 (87098112-87098434)
	187-457, gnl\|rheMac2\|chr12 (60127487-60127811)
	187-457, gnl\|rn3\|chr9 (52903292-52903583)