Non-Coding RNA Search

rret38_g18.y1

Sequence:


               
               CAAACTGGGATGAGTTATTTAGCTTATACGATCCTCTTCTTTTTACTTAAACCTGAAAAT
GGAAATAAGGATACCCTACTGGATTGCTACGAAGATTGATAACCCTTGTAAACCTCTCAG
CACATTTTCTGGCCCATAATAGCAATCAGCACATGTTCGGGCCCCTCTCTTCCCTCCCTA
TTTCCTCATTTCATTGGAAATTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTGGGATGAGTTATTTAGCTTATACGATCCTCTTCTTTTTACTTAAACCTGAAAAT
GGAAATAAGGATACCCTACTGGATTGCTACGAAGATTGATAACCCTTGTAAACCTCTCAG
CACATTTTCTGGCCCATAATAGCAATCAGCACATGTTCGGGCCCCTCTCTTCCCTCCCTA
TTTCCTCATTTCATTGGAAATTGCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               9-205, gnl|bosTau2|chr8 (43200734-43200930)
               

               
               9-205, gnl|canFam2|chr1 (77592782-77592491)
               

               
               9-205, gnl|dasNov1|scaffold_105291 (307-4)
               

               
               9-205, gnl|hg17|chr9 (84772147-84772449)
               

               
               9-205, gnl|Hg17|chr9 (84772150-84772343)
               

               
               9-205, gnl|loxAfr1|scaffold_35475 (40076-39768)
               

               
               9-205, gnl|mm7|chr13 (58128674-58128962)
               

               
               9-205, gnl|Mm7|chr13 (58128677-58128856)
               

               
               9-205, gnl|oryCun1|scaffold_214357 (137024-137325)
               

               
               9-205, gnl|panTro1|chr11 (68833785-68834087)
               

               
               9-205, gnl|rheMac2|chr15 (93669582-93669886)
               

               
               9-205, gnl|rn3|chr17 (11577111-11576819)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-205, gnl|bosTau2|chr8 (43200734-43200930)
               

               
               9-205, gnl|canFam2|chr1 (77592782-77592491)
               

               
               9-205, gnl|dasNov1|scaffold_105291 (307-4)
               

               
               9-205, gnl|hg17|chr9 (84772147-84772449)
               

               
               9-205, gnl|Hg17|chr9 (84772150-84772343)
               

               
               9-205, gnl|loxAfr1|scaffold_35475 (40076-39768)
               

               
               9-205, gnl|mm7|chr13 (58128674-58128962)
               

               
               9-205, gnl|Mm7|chr13 (58128677-58128856)
               

               
               9-205, gnl|oryCun1|scaffold_214357 (137024-137325)
               

               
               9-205, gnl|panTro1|chr11 (68833785-68834087)
               

               
               9-205, gnl|rheMac2|chr15 (93669582-93669886)
               

               
               9-205, gnl|rn3|chr17 (11577111-11576819)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	9-205, gnl\|bosTau2\|chr8 (43200734-43200930)
	9-205, gnl\|canFam2\|chr1 (77592782-77592491)
	9-205, gnl\|dasNov1\|scaffold_105291 (307-4)
	9-205, gnl\|hg17\|chr9 (84772147-84772449)
	9-205, gnl\|Hg17\|chr9 (84772150-84772343)
	9-205, gnl\|loxAfr1\|scaffold_35475 (40076-39768)
	9-205, gnl\|mm7\|chr13 (58128674-58128962)
	9-205, gnl\|Mm7\|chr13 (58128677-58128856)
	9-205, gnl\|oryCun1\|scaffold_214357 (137024-137325)
	9-205, gnl\|panTro1\|chr11 (68833785-68834087)
	9-205, gnl\|rheMac2\|chr15 (93669582-93669886)
	9-205, gnl\|rn3\|chr17 (11577111-11576819)