Non-Coding RNA Search

rret38_p20.y1

Sequence:


               
               AGGCAGTACCTTACATAGTGCCTGGCACAGAGTAGAAGTTCAAATAAATACATGTTGAAT
AAATAAATGAGTGAAATCAAATTTAACCATACTTTTTTTTGCCAAAATCTCTACTGGCGC
AAAATTGCCTAAAGTTACATATTTTTGTGTTTGTGAAAATCATATATTCTAGGTCCTTAC
AAATCCTGTGAAACTATTGTTTATTATTTCTAATACAAAAATTGTGGCATTCTGTCAATA
TTTATGCAATAGCAACATGAGGGCACAGAGTGGGAACTGCTCAAAGAGATGATAATTCTT
TTCACTTTGCCATCATTTACATTTTGTCAACTTTAGAAAAGGAGAAAATGGTGAGAAAAA
TCTGTAAAGAGTTTACACACAAAAGAATATTTCAACGAAGGAAAATATGTCAGCTCACTA
TACCATATTTTGTTCTTTCAAAATATTACAAAATTGACATGGGACATAATGATGTTTGAT
GTTCGAAGAAAAATACAATATGTTTAGGAAACTGTATATGTGATATGGATGCATCGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGTACCTTACATAGTGCCTGGCACAGAGTAGAAGTTCAAATAAATACATGTTGAAT
AAATAAATGAGTGAAATCAAATTTAACCATACTTTTTTTTGCCAAAATCTCTACTGGCGC
AAAATTGCCTAAAGTTACATATTTTTGTGTTTGTGAAAATCATATATTCTAGGTCCTTAC
AAATCCTGTGAAACTATTGTTTATTATTTCTAATACAAAAATTGTGGCATTCTGTCAATA
TTTATGCAATAGCAACATGAGGGCACAGAGTGGGAACTGCTCAAAGAGATGATAATTCTT
TTCACTTTGCCATCATTTACATTTTGTCAACTTTAGAAAAGGAGAAAATGGTGAGAAAAA
TCTGTAAAGAGTTTACACACAAAAGAATATTTCAACGAAGGAAAATATGTCAGCTCACTA
TACCATATTTTGTTCTTTCAAAATATTACAAAATTGACATGGGACATAATGATGTTTGAT
GTTCGAAGAAAAATACAATATGTTTAGGAAACTGTATATGTGATATGGATGCATCGCTG

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               17-169, gnl|bosTau2|chr3 (36249553-36249706)
               

               
               17-169, gnl|Hg17|chr1 (98202071-98202214)
               


               
               177-535, gnl|bosTau2|chr3 (36249753-36250113)
               

               
               177-535, gnl|Hg17|chr1 (98202219-98202570)
               

               
               177-535, gnl|Mm7|chr3 (118229047-118228692)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-169, gnl|bosTau2|chr3 (36249553-36249706)
               

               
               17-169, gnl|Hg17|chr1 (98202071-98202214)
               


               
               177-535, gnl|bosTau2|chr3 (36249753-36250113)
               

               
               177-535, gnl|Hg17|chr1 (98202219-98202570)
               

               
               177-535, gnl|Mm7|chr3 (118229047-118228692)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	17-169, gnl\|bosTau2\|chr3 (36249553-36249706)
	17-169, gnl\|Hg17\|chr1 (98202071-98202214)

	177-535, gnl\|bosTau2\|chr3 (36249753-36250113)
	177-535, gnl\|Hg17\|chr1 (98202219-98202570)
	177-535, gnl\|Mm7\|chr3 (118229047-118228692)