Non-Coding RNA Search

rsag001_h22.y1

Sequence:


               
               AAGAAGTGGCTGTGCTTCTAACTGATTCTCCTGGTTCTTATCTTTGGGCTGGTAGTGAGA
TGGCAGCAACTTCTCTTCCTTCATCTTCCTAAACTAATCATTGGGAAAGAGAATTGGGAT
CACCATGATTTAATTAGTCTAATCATCAGAAATGAGATGAATGTTGGGCAGTTAATCATC
ATATAAGTATTCCTTATACCATGATTTATTTAACTAATTTCCTATTGAGGGTTATTTTCA
AATTTTCATGATTATAAATAATGTTGTTATGAACATCTTTGTTCCATGTAATTTTGTATA
CTTATGCAAGGATTTCTGCATACTAGATTTCTGGAGTAGAATTTCTGGGTCAAAAGAAGT
TGATAGACATTGCTGAACTAAAGTTCTAATTTGAATGTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGTGGCTGTGCTTCTAACTGATTCTCCTGGTTCTTATCTTTGGGCTGGTAGTGAGA
TGGCAGCAACTTCTCTTCCTTCATCTTCCTAAACTAATCATTGGGAAAGAGAATTGGGAT
CACCATGATTTAATTAGTCTAATCATCAGAAATGAGATGAATGTTGGGCAGTTAATCATC
ATATAAGTATTCCTTATACCATGATTTATTTAACTAATTTCCTATTGAGGGTTATTTTCA
AATTTTCATGATTATAAATAATGTTGTTATGAACATCTTTGTTCCATGTAATTTTGTATA
CTTATGCAAGGATTTCTGCATACTAGATTTCTGGAGTAGAATTTCTGGGTCAAAAGAAGT
TGATAGACATTGCTGAACTAAAGTTCTAATTTGAATGTAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-336, + strand, RNAz p=0.683393

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-336, + strand, RNAz p=0.683393

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               44-395, gnl|bosTau2|chr11 (17449451-17449103)
               

               
               44-395, gnl|Hg17|chr2 (46739447-46739078)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-395, gnl|bosTau2|chr11 (17449451-17449103)
               

               
               44-395, gnl|Hg17|chr2 (46739447-46739078)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sag (0.182715)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	44-395, gnl\|bosTau2\|chr11 (17449451-17449103)
	44-395, gnl\|Hg17\|chr2 (46739447-46739078)