Non-Coding RNA Search

rsag025_o21.y1

Sequence:


               
               AATTCTCTGAAGGCGAAAGGGGAGATCTTTCCTCATCCTATGAAACGCCTCTGACTTTGT
GCTGTTAAAAATATGAAAAAATACTTTGGACTTTGGACTGTATAATATTGCAAACATTTG
CATTTGGGCAGAAAATGTGGACTTAAAATGAGCTGACCTAAGAAGGCCTCGTGCTGAACT
GTTTCACTTCTTTTGGCGTTTATTTGCCTCACAGCGTATTTTTTTTGCCTTCTTGCCCTG
TTCTTGCTTTCTCAATTTTGTACATTCTGACAGTGTAGAAGATTTGTAATTCCCTCGTGG
CAATCCAGGCACATGCAGTATTTGAAAGAAGAAGCCATGAGAGACATTCTCTCTGAGAGG
TAATGCCAACCATTAAAATCGTTTATTTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTCTGAAGGCGAAAGGGGAGATCTTTCCTCATCCTATGAAACGCCTCTGACTTTGT
GCTGTTAAAAATATGAAAAAATACTTTGGACTTTGGACTGTATAATATTGCAAACATTTG
CATTTGGGCAGAAAATGTGGACTTAAAATGAGCTGACCTAAGAAGGCCTCGTGCTGAACT
GTTTCACTTCTTTTGGCGTTTATTTGCCTCACAGCGTATTTTTTTTGCCTTCTTGCCCTG
TTCTTGCTTTCTCAATTTTGTACATTCTGACAGTGTAGAAGATTTGTAATTCCCTCGTGG
CAATCCAGGCACATGCAGTATTTGAAAGAAGAAGCCATGAGAGACATTCTCTCTGAGAGG
TAATGCCAACCATTAAAATCGTTTATTTAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               22-397, gnl|bosTau2|chr16 (8285427-8285801)
               

               
               22-397, gnl|canFam2|chr38 (14891041-14891286)
               

               
               22-397, gnl|dasNov1|scaffold_7477 (55086-55325)
               

               
               22-397, gnl|echTel1|scaffold_315930 (41223-40981)
               

               
               22-397, gnl|hg17|chr1 (213135904-213136143)
               

               
               22-397, gnl|Hg17|chr1 (213136290-213135918)
               

               
               22-397, gnl|loxAfr1|scaffold_8750 (55433-55180)
               

               
               22-397, gnl|mm7|chr1 (187669013-187668745)
               

               
               22-397, gnl|Mm7|chr1 (187668608-187668997)
               

               
               22-397, gnl|monDom2|scaffold_13 (21772969-21773212)
               

               
               22-397, gnl|oryCun1|scaffold_199108 (52062-52304)
               

               
               22-397, gnl|panTro1|chr1 (196854519-196854758)
               

               
               22-397, gnl|rheMac2|chr1 (153855097-153854858)
               

               
               22-397, gnl|rn3|chr13 (104485811-104485570)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-397, gnl|bosTau2|chr16 (8285427-8285801)
               

               
               22-397, gnl|canFam2|chr38 (14891041-14891286)
               

               
               22-397, gnl|dasNov1|scaffold_7477 (55086-55325)
               

               
               22-397, gnl|echTel1|scaffold_315930 (41223-40981)
               

               
               22-397, gnl|hg17|chr1 (213135904-213136143)
               

               
               22-397, gnl|Hg17|chr1 (213136290-213135918)
               

               
               22-397, gnl|loxAfr1|scaffold_8750 (55433-55180)
               

               
               22-397, gnl|mm7|chr1 (187669013-187668745)
               

               
               22-397, gnl|Mm7|chr1 (187668608-187668997)
               

               
               22-397, gnl|monDom2|scaffold_13 (21772969-21773212)
               

               
               22-397, gnl|oryCun1|scaffold_199108 (52062-52304)
               

               
               22-397, gnl|panTro1|chr1 (196854519-196854758)
               

               
               22-397, gnl|rheMac2|chr1 (153855097-153854858)
               

               
               22-397, gnl|rn3|chr13 (104485811-104485570)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               sag (0.182715)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	22-397, gnl\|bosTau2\|chr16 (8285427-8285801)
	22-397, gnl\|canFam2\|chr38 (14891041-14891286)
	22-397, gnl\|dasNov1\|scaffold_7477 (55086-55325)
	22-397, gnl\|echTel1\|scaffold_315930 (41223-40981)
	22-397, gnl\|hg17\|chr1 (213135904-213136143)
	22-397, gnl\|Hg17\|chr1 (213136290-213135918)
	22-397, gnl\|loxAfr1\|scaffold_8750 (55433-55180)
	22-397, gnl\|mm7\|chr1 (187669013-187668745)
	22-397, gnl\|Mm7\|chr1 (187668608-187668997)
	22-397, gnl\|monDom2\|scaffold_13 (21772969-21773212)
	22-397, gnl\|oryCun1\|scaffold_199108 (52062-52304)
	22-397, gnl\|panTro1\|chr1 (196854519-196854758)
	22-397, gnl\|rheMac2\|chr1 (153855097-153854858)
	22-397, gnl\|rn3\|chr13 (104485811-104485570)