Non-Coding RNA Search

rsag031_b15.y1

Sequence:


               
               GAAAACCTGACACGACTTTAGGATTTGAAAACAAAAGCAATGTTAAGGATTGAATGAGAC
ATTTGTATTGCCCACACACTGTTCTAACGTAGTGAAGAAACCTGCACCCCTCAAAGGGCT
TAAGGAACTTTTAAAACGAGTCTTTGGTAAAACCACACGTGTATATTTATTCTAAATCAA
CCTGAACTTCTGAAACGTGCAATTGTTGAGATTCTGCAAAATCAATAAAATATGTATAGA
AAAAAAGTTATGCTACACCCTCTAATCAAAAAGCTTAACAAAATAAGCTGTAATCCATTA
CTAGGAAACCAATCAATAACTCATTTTTTGAGTGATCCTTTGTTTATTTTTAACAGGTGA
CCTATTTAGTTGGAAAATACATGTATAACTGAAGCAATATCTGAATTTAGCTCCTCCTGG
TGTTTAGATTGGTTCCAAATACAATAATGTTTATATTTTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACCTGACACGACTTTAGGATTTGAAAACAAAAGCAATGTTAAGGATTGAATGAGAC
ATTTGTATTGCCCACACACTGTTCTAACGTAGTGAAGAAACCTGCACCCCTCAAAGGGCT
TAAGGAACTTTTAAAACGAGTCTTTGGTAAAACCACACGTGTATATTTATTCTAAATCAA
CCTGAACTTCTGAAACGTGCAATTGTTGAGATTCTGCAAAATCAATAAAATATGTATAGA
AAAAAAGTTATGCTACACCCTCTAATCAAAAAGCTTAACAAAATAAGCTGTAATCCATTA
CTAGGAAACCAATCAATAACTCATTTTTTGAGTGATCCTTTGTTTATTTTTAACAGGTGA
CCTATTTAGTTGGAAAATACATGTATAACTGAAGCAATATCTGAATTTAGCTCCTCCTGG
TGTTTAGATTGGTTCCAAATACAATAATGTTTATATTTTCAAAAAAAAAAAAAAAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-460, gnl|bosTau2|chr21 (31624015-31624467)
               

               
               1-460, gnl|canFam2|chr8 (18243646-18244246)
               

               
               1-460, gnl|dasNov1|scaffold_2281 (149709-149115)
               

               
               1-460, gnl|echTel1|scaffold_323880 (53656-53015)
               

               
               1-460, gnl|galGal2|chr5 (33603274-33603827)
               

               
               1-460, gnl|hg17|chr14 (36215521-36216114)
               

               
               1-460, gnl|Hg17|chr14 (36215596-36216054)
               

               
               1-460, gnl|loxAfr1|scaffold_15194 (15587-16187)
               

               
               1-460, gnl|mm7|chr12 (54640370-54640964)
               

               
               1-460, gnl|Mm7|chr12 (54640451-54640916)
               

               
               1-460, gnl|monDom2|scaffold_73 (297786-297181)
               

               
               1-460, gnl|oryCun1|scaffold_205839 (35802-36402)
               

               
               1-460, gnl|panTro1|chr15 (35538085-35538676)
               

               
               1-460, gnl|rheMac2|chr7 (99633743-99634339)
               

               
               1-460, gnl|rn3|chr6 (77125018-77125609)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-460, gnl|bosTau2|chr21 (31624015-31624467)
               

               
               1-460, gnl|canFam2|chr8 (18243646-18244246)
               

               
               1-460, gnl|dasNov1|scaffold_2281 (149709-149115)
               

               
               1-460, gnl|echTel1|scaffold_323880 (53656-53015)
               

               
               1-460, gnl|galGal2|chr5 (33603274-33603827)
               

               
               1-460, gnl|hg17|chr14 (36215521-36216114)
               

               
               1-460, gnl|Hg17|chr14 (36215596-36216054)
               

               
               1-460, gnl|loxAfr1|scaffold_15194 (15587-16187)
               

               
               1-460, gnl|mm7|chr12 (54640370-54640964)
               

               
               1-460, gnl|Mm7|chr12 (54640451-54640916)
               

               
               1-460, gnl|monDom2|scaffold_73 (297786-297181)
               

               
               1-460, gnl|oryCun1|scaffold_205839 (35802-36402)
               

               
               1-460, gnl|panTro1|chr15 (35538085-35538676)
               

               
               1-460, gnl|rheMac2|chr7 (99633743-99634339)
               

               
               1-460, gnl|rn3|chr6 (77125018-77125609)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sag (0.182715)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	1-460, gnl\|bosTau2\|chr21 (31624015-31624467)
	1-460, gnl\|canFam2\|chr8 (18243646-18244246)
	1-460, gnl\|dasNov1\|scaffold_2281 (149709-149115)
	1-460, gnl\|echTel1\|scaffold_323880 (53656-53015)
	1-460, gnl\|galGal2\|chr5 (33603274-33603827)
	1-460, gnl\|hg17\|chr14 (36215521-36216114)
	1-460, gnl\|Hg17\|chr14 (36215596-36216054)
	1-460, gnl\|loxAfr1\|scaffold_15194 (15587-16187)
	1-460, gnl\|mm7\|chr12 (54640370-54640964)
	1-460, gnl\|Mm7\|chr12 (54640451-54640916)
	1-460, gnl\|monDom2\|scaffold_73 (297786-297181)
	1-460, gnl\|oryCun1\|scaffold_205839 (35802-36402)
	1-460, gnl\|panTro1\|chr15 (35538085-35538676)
	1-460, gnl\|rheMac2\|chr7 (99633743-99634339)
	1-460, gnl\|rn3\|chr6 (77125018-77125609)