Non-Coding RNA Search

rsin12_e19.y1

Sequence:


               
               CAAAACAACAACAAAAAAACTCCAACAACAACCTGGTAAGCTTTTTAAAAGAACCAAAAA
TGTAGACACTACCTTAGAGATAATGGGGTGGGGTCAGCATTATCTTTTTCTGAAGACATC
AGCTAATTCTATAATGCAGGGTTAAGAACCTAGTTAACTTAAAGATAGGTAAAAATATTT
TCATGTTACAATGAATATACTAAAGAAAATGTGCAGTCAACAGTCATGGGAGAAAAACAT
ATATACCCTTTTGTAGAAACTTTGAGGCTAAATAGTAAAACTTGGATATGATTTTATTGA
TCTAGTTTGAACTCtttaaagtttattttgtctaatatgagtattgctactccaattttc
ttttgatttccatttgcctggaaaacccttttccatcctctctcagtctgtatgtgttcc
tagaattgaagtaagtctcttgtaaacagcatgtagatacatcttgtttttgtatccttt
cagctagtctatgttttttagttgtggcatttaatccatttacatttaaggtaattaTCA
ATATATATGTACTTATTGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAACAACAACAAAAAAACTCCAACAACAACCTGGTAAGCTTTTTAAAAGAACCAAAAA
TGTAGACACTACCTTAGAGATAATGGGGTGGGGTCAGCATTATCTTTTTCTGAAGACATC
AGCTAATTCTATAATGCAGGGTTAAGAACCTAGTTAACTTAAAGATAGGTAAAAATATTT
TCATGTTACAATGAATATACTAAAGAAAATGTGCAGTCAACAGTCATGGGAGAAAAACAT
ATATACCCTTTTGTAGAAACTTTGAGGCTAAATAGTAAAACTTGGATATGATTTTATTGA
TCTAGTTTGAACTCtttaaagtttattttgtctaatatgagtattgctactccaattttc
ttttgatttccatttgcctggaaaacccttttccatcctctctcagtctgtatgtgttcc
tagaattgaagtaagtctcttgtaaacagcatgtagatacatcttgtttttgtatccttt
cagctagtctatgttttttagttgtggcatttaatccatttacatttaaggtaattaTCA
ATATATATGTACTTATTGCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886575|ref|XP_586939.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886575|ref|XP_586939.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-121, + strand, RNAz p=0.551251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, + strand, RNAz p=0.551251

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-159, gnl|bosTau2|chr20 (18198175-18198328)
               

               
               3-159, gnl|Hg17|chr5 (42835015-42834880)
               


               
               313-562, gnl|bosTau2|chr21 (7266797-7267048)
               


               
               315-560, gnl|bosTau2|chr10 (38537870-38538119)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-159, gnl|bosTau2|chr20 (18198175-18198328)
               

               
               3-159, gnl|Hg17|chr5 (42835015-42834880)
               


               
               313-562, gnl|bosTau2|chr21 (7266797-7267048)
               


               
               315-560, gnl|bosTau2|chr10 (38537870-38538119)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	3-159, gnl\|bosTau2\|chr20 (18198175-18198328)
	3-159, gnl\|Hg17\|chr5 (42835015-42834880)

	313-562, gnl\|bosTau2\|chr21 (7266797-7267048)

	315-560, gnl\|bosTau2\|chr10 (38537870-38538119)